5xvu - Revision history

OCA at 08:15, 22 November 2023

OCA — Wed, 22 Nov 2023 08:15:48 GMT

←Older revision		Revision as of 08:15, 22 November 2023
Line 3:		Line 3:
	<StructureSection load='5xvu' size='340' side='right'caption='[[5xvu]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='5xvu' size='340' side='right'caption='[[5xvu]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xvu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Plaf7 Plaf7~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XVU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xvu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XVU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF11_0096, PF3D7_1108400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvu OCA], [https://pdbe.org/5xvu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xvu RCSB], [https://www.ebi.ac.uk/pdbsum/5xvu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvu OCA], [https://pdbe.org/5xvu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xvu RCSB], [https://www.ebi.ac.uk/pdbsum/5xvu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvu ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8IIR9_PLAF7 Q8IIR9_PLAF7]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Non-specific serine/threonine protein kinase~~]]	+	[[Category: Plasmodium falciparum 3D7]]
-	[[Category: ~~Plaf7~~]]	+	[[Category: El Sahili A]]
-	[[Category: Lescar, J]]	+	[[Category: Lescar J]]
-	[[Category: Lin~~, J Q~~]]	+	[[Category: Lin JQ]]
-	[[Category: Ruiz-Carrillo, D]]	+	[[Category: Ruiz-Carrillo D]]
-	~~[[Category: Sahili, A El]]~~	+
-	~~[[Category: Casein kinase 2 plasmodium falciparum kinase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 15:52, 3 November 2021

OCA — Wed, 03 Nov 2021 15:52:03 GMT

←Older revision		Revision as of 15:52, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='5xvu' size='340' side='right'caption='[[5xvu]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='5xvu' size='340' side='right'caption='[[5xvu]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xvu]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Plaf7 Plaf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5XVU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xvu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Plaf7 Plaf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XVU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF11_0096, PF3D7_1108400 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF11_0096, PF3D7_1108400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5xvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvu OCA], [~~http~~://pdbe.org/5xvu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5xvu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5xvu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvu OCA], [https://pdbe.org/5xvu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xvu RCSB], [https://www.ebi.ac.uk/pdbsum/5xvu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvu ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 29:		Line 29:
	[[Category: Plaf7]]		[[Category: Plaf7]]
	[[Category: Lescar, J]]		[[Category: Lescar, J]]
-	[[Category: Lin, J]]	+	[[Category: Lin, J Q]]
	[[Category: Ruiz-Carrillo, D]]		[[Category: Ruiz-Carrillo, D]]
	[[Category: Sahili, A El]]		[[Category: Sahili, A El]]
	[[Category: Casein kinase 2 plasmodium falciparum kinase]]		[[Category: Casein kinase 2 plasmodium falciparum kinase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 06:59, 14 October 2020

OCA — Wed, 14 Oct 2020 06:59:48 GMT

←Older revision		Revision as of 06:59, 14 October 2020
Line 1:		Line 1:

	==Crystal structure of the protein kinase CK2 catalytic domain from Plasmodium falciparum bound to ATP==		==Crystal structure of the protein kinase CK2 catalytic domain from Plasmodium falciparum bound to ATP==
-	<StructureSection load='5xvu' size='340' side='right' caption='[[5xvu]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='5xvu' size='340' side='right'caption='[[5xvu]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xvu]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVU OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca.weizmann.ac~~.~~il/oca-docs~~/fgij/fg.htm?mol=5XVU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xvu]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Plaf7 Plaf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5XVU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF11_0096, PF3D7_1108400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5xvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvu OCA], [http://pdbe.org/5xvu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xvu RCSB], [http://www.ebi.ac.uk/pdbsum/5xvu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5xvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvu OCA], [http://pdbe.org/5xvu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xvu RCSB], [http://www.ebi.ac.uk/pdbsum/5xvu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvu ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Malaria causes every year over half-a-million deaths. The emergence of parasites resistant to available treatments makes the identification of new targets and their inhibitors an urgent task for the development of novel anti-malaria drugs. Protein kinase CK2 is an evolutionary-conserved eukaryotic serine/threonine protein kinase that in Plasmodium falciparum (PfCK2) has been characterized as a promising target for chemotherapeutic intervention against malaria. Here we report a crystallographic structure of the catalytic domain of PfCK2alpha (D179S inactive single mutant) in complex with ATP at a resolution of 3.0 A. Compared to the human enzyme, the structure reveals a subtly altered ATP binding pocket comprising five substitutions in the vicinity of the adenine base, that together with potential allosteric sites, could be exploited to design novel inhibitors specifically targeting the Plasmodium enzyme. We provide evidence for the dual autophosphorylation of residues Thr(63) and Tyr(30) of PfCK2. We also show that CX4945, a human CK2 inhibitor in clinical trials against solid tumor cancers, is effective against PfCK2 with an IC50 of 13.2 nM.
		+
		+	The protein kinase CK2 catalytic domain from Plasmodium falciparum: crystal structure, tyrosine kinase activity and inhibition.,Ruiz-Carrillo D, Lin J, El Sahili A, Wei M, Sze SK, Cheung PCF, Doerig C, Lescar J Sci Rep. 2018 May 9;8(1):7365. doi: 10.1038/s41598-018-25738-5. PMID:29743645<ref>PMID:29743645</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5xvu" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Casein kinase 3D structures\|Casein kinase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Non-specific serine/threonine protein kinase]]		[[Category: Non-specific serine/threonine protein kinase]]
		+	[[Category: Plaf7]]
	[[Category: Lescar, J]]		[[Category: Lescar, J]]
	[[Category: Lin, J]]		[[Category: Lin, J]]

OCA: Protected "5xvu" [edit=sysop:move=sysop]

OCA — Sun, 10 Sep 2017 10:07:11 GMT

Protected "5xvu" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:07, 10 September 2017

OCA: New page: ==Crystal structure of the protein kinase CK2 catalytic domain from Plasmodium falciparum bound to ATP== == Structural highlights ==
<table><tr><td colspan='2'>[[5xvu]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XVU OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XVU FirstGlance]. 
</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </td></tr>
<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xvu OCA], [http://pdbe.org/5xvu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xvu RCSB], [http://www.ebi.ac.uk/pdbsum/5xvu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xvu ProSAT]</td></tr>
</table>
TOC
</StructureSection>
[[Category: Non-specific serine/threonine protein kinase]]
[[Category: Lescar, J]]
[[Category: Lin, J]]
[[Category: Ruiz-Carrillo, D]]
[[Category: Sahili, A El]]
[[Category: Casein kinase 2 plasmodium falciparum kinase]]
[[Category: Transferase]]