5xz3 - Revision history

OCA at 08:17, 22 November 2023

OCA — Wed, 22 Nov 2023 08:17:54 GMT

←Older revision		Revision as of 08:17, 22 November 2023
Line 1:		Line 1:

	==The X-ray structure of Apis mellifera PGRP-SA==		==The X-ray structure of Apis mellifera PGRP-SA==
-	<StructureSection load='5xz3' size='340' side='right' caption='[[5xz3]], [[Resolution\|resolution]] 1.86Å' scene=''>	+	<StructureSection load='5xz3' size='340' side='right'caption='[[5xz3]], [[Resolution\|resolution]] 1.86Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xz3]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Apime Apime~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XZ3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5XZ3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xz3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XZ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XZ3 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.86Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~PGRP-S3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=7460 APIME])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5xz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xz3 OCA], [~~http~~://pdbe.org/5xz3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5xz3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5xz3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5xz3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xz3 OCA], [https://pdbe.org/5xz3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xz3 RCSB], [https://www.ebi.ac.uk/pdbsum/5xz3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xz3 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Apime]]
-	[[Category: An, J D]]
-	[[Category: Huang, J X]]
-	[[Category: Liu, Y J]]
-	[[Category: Zhao, X M]]
	[[Category: Apis mellifera]]		[[Category: Apis mellifera]]
-	[[Category: ~~Immune system~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Pgrp-sa~~]]	+	[[Category: An JD]]
		+	[[Category: Huang JX]]
		+	[[Category: Liu YJ]]
		+	[[Category: Zhao XM]]

OCA at 09:22, 30 January 2019

OCA — Wed, 30 Jan 2019 09:22:50 GMT

←Older revision		Revision as of 09:22, 30 January 2019
Line 3:		Line 3:
	<StructureSection load='5xz3' size='340' side='right' caption='[[5xz3]], [[Resolution\|resolution]] 1.86Å' scene=''>		<StructureSection load='5xz3' size='340' side='right' caption='[[5xz3]], [[Resolution\|resolution]] 1.86Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xz3]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XZ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XZ3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xz3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Apime Apime]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XZ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XZ3 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PGRP-S3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7460 APIME])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xz3 OCA], [http://pdbe.org/5xz3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xz3 RCSB], [http://www.ebi.ac.uk/pdbsum/5xz3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xz3 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xz3 OCA], [http://pdbe.org/5xz3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xz3 RCSB], [http://www.ebi.ac.uk/pdbsum/5xz3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xz3 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Peptidoglycan recognition protein SA (PGRP-SA) is a key pattern recognition receptor in the insect innate immune system. PGRP-SA can bind to bacterial PGN and activate the Toll pathway, which triggers the expression and release of antimicrobial peptides to prevent bacterial infection. Here, we report the first structure of Apis mellifera PGRP-SA from Hymenoptera at 1.86 A resolution. The overall architecture of Am-PGRP-SA was similar to the Drosophila PGRP-SA; however, the residues involved in PGN binding groove were not conserved, and the binding pocket was narrower. This structure gives insight into PGN binding characteristics in honeybees.
		+
		+	Crystal structure of peptidoglycan recognition protein SA in Apis mellifera (Hymenoptera: Apidae).,Liu Y, Zhao X, Naeem M, An J Protein Sci. 2018 Apr;27(4):893-897. doi: 10.1002/pro.3383. Epub 2018 Mar 14. PMID:29396863<ref>PMID:29396863</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5xz3" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Apime]]
	[[Category: An, J D]]		[[Category: An, J D]]
	[[Category: Huang, J X]]		[[Category: Huang, J X]]

OCA at 07:29, 18 July 2018

OCA — Wed, 18 Jul 2018 07:29:05 GMT

←Older revision		Revision as of 07:29, 18 July 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	The ~~entry~~ 5xz3 is ~~ON HOLD until Paper Publication~~	+	==The X-ray structure of Apis mellifera PGRP-SA==
-		+	<StructureSection load='5xz3' size='340' side='right' caption='[[5xz3]], [[Resolution\|resolution]] 1.86Å' scene=''>
-	~~Authors~~: ~~Liu~~, Y.J., ~~Huang~~, J.X., ~~Zhao, X~~.M., ~~An, J~~.D.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5xz3]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XZ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XZ3 FirstGlance]. <br>
-	~~Description: The X-ray structure of Apis mellifera PGRP-SA~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xz3 OCA], [http://pdbe.org/5xz3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xz3 RCSB], [http://www.ebi.ac.uk/pdbsum/5xz3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xz3 ProSAT]</span></td></tr>
-	[[Category: Huang, J.X]]	+	</table>
-	[[Category: Zhao, X.M]]	+	__TOC__
-	[[Category: ~~Liu, Y.J~~]]	+	</StructureSection>
-	[[Category: ~~An, J.D~~]]	+	[[Category: An, J D]]
		+	[[Category: Huang, J X]]
		+	[[Category: Liu, Y J]]
		+	[[Category: Zhao, X M]]
		+	[[Category: Apis mellifera]]
		+	[[Category: Immune system]]
		+	[[Category: Pgrp-sa]]

OCA: Protected "5xz3" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 15:56:24 GMT

Protected "5xz3" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:56, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5xz3 is ON HOLD until Paper Publication Authors: Liu, Y.J., Huang, J.X., Zhao, X.M., An, J.D. Description: The X-ray structure of Apis mellifera PG...

OCA — Wed, 27 Sep 2017 15:56:22 GMT

New page: '''Unreleased structure''' The entry 5xz3 is ON HOLD until Paper Publication Authors: Liu, Y.J., Huang, J.X., Zhao, X.M., An, J.D. Description: The X-ray structure of Apis mellifera PG...

New page

'''Unreleased structure'''

The entry 5xz3 is ON HOLD until Paper Publication

Authors: Liu, Y.J., Huang, J.X., Zhao, X.M., An, J.D.

Description: The X-ray structure of Apis mellifera PGRP-SA
[[Category: Unreleased Structures]]
[[Category: Huang, J.X]]
[[Category: Zhao, X.M]]
[[Category: Liu, Y.J]]
[[Category: An, J.D]]