5y05 - Revision history

OCA at 10:21, 27 March 2024

OCA — Wed, 27 Mar 2024 10:21:08 GMT

←Older revision		Revision as of 10:21, 27 March 2024
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	<StructureSection load='5y05' size='340' side='right'caption='[[5y05]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='5y05' size='340' side='right'caption='[[5y05]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y05]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y05 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5Y05 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y05]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis_MC2_155 Mycolicibacterium smegmatis MC2 155]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y05 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y05 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.799Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5y05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y05 OCA], [~~http~~://pdbe.org/5y05 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5y05 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5y05 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5y05 ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y05 OCA], [https://pdbe.org/5y05 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y05 RCSB], [https://www.ebi.ac.uk/pdbsum/5y05 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y05 ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/A0R095_MYCS2 A0R095_MYCS2]
-	The MSMEG_4306 gene from Mycobacterium smegmatis encodes a protein of unknown function with 242 amino-acid residues that contains a conserved zinc-ribbon domain at its C-terminus. Here, the crystal structure of MSMEG_4306 determined by the single-wavelength anomalous dispersion method using just one zinc ion co-purified with the protein is reported. The crystal structure of MSMEG_4306 shows a coiled-coil helix domain in the N-terminal region and a zinc-ribbon domain in the C-terminal region. A structural similarity search against the Protein Data Bank using MSMEG_4306 as a query revealed two similar structures, namely CT398 from Chlamydia trachomatis and HP0958 from Helicobacter pylori, although they share only approximately 15% sequence identity with MSMEG_4306. Based on comparative analysis, it is predicted that MSMEG_4306 may be involved in secretion systems, possibly by interacting with multiple proteins or nucleic acids.	+
-		+
-	~~Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis.,Kumar A, Karthikeyan S Acta Crystallogr F Struct Biol Commun. 2018 Mar 1;74(Pt 3)~~:~~166-173. doi:, 10.1107~~/~~S2053230X18002236. Epub 2018 Feb 26. PMID:29497021<ref>PMID:29497021<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 5y05" style="background-color:#fffaf0;"><~~/~~div>~~	+

	==See Also==		==See Also==
	*[[Kinesin 3D Structures\|Kinesin 3D Structures]]		*[[Kinesin 3D Structures\|Kinesin 3D Structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Karthikeyan, S~~]]	+	[[Category: Mycolicibacterium smegmatis MC2 155]]
-	[[Category: ~~Kumar, A~~]]	+	[[Category: Karthikeyan S]]
-	[[Category: ~~Coiled coil helix]]~~	+	[[Category: Kumar A]]
-	~~[[Category: Hypothetical]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Zinc ribbon]]~~	+
-	~~[[Category: Zinc-sad~~]]	+

OCA at 07:02, 14 October 2020

OCA — Wed, 14 Oct 2020 07:02:11 GMT

←Older revision		Revision as of 07:02, 14 October 2020
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	==Structural characterization of msmeg_4306 from Mycobacterium smegmatis==		==Structural characterization of msmeg_4306 from Mycobacterium smegmatis==
-	<StructureSection load='5y05' size='340' side='right' caption='[[5y05]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='5y05' size='340' side='right'caption='[[5y05]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y05]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y05 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Y05 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y05]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y05 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Y05 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5y05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y05 OCA], [http://pdbe.org/5y05 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y05 RCSB], [http://www.ebi.ac.uk/pdbsum/5y05 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y05 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5y05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y05 OCA], [http://pdbe.org/5y05 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y05 RCSB], [http://www.ebi.ac.uk/pdbsum/5y05 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y05 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5y05" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5y05" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Kinesin 3D Structures\|Kinesin 3D Structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Karthikeyan, S]]		[[Category: Karthikeyan, S]]
	[[Category: Kumar, A]]		[[Category: Kumar, A]]

OCA at 08:04, 2 May 2018

OCA — Wed, 02 May 2018 08:04:20 GMT

←Older revision		Revision as of 08:04, 2 May 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5y05 is ~~ON HOLD until Paper~~ Publication	+	==Structural characterization of msmeg_4306 from Mycobacterium smegmatis==
		+	<StructureSection load='5y05' size='340' side='right' caption='[[5y05]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5y05]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y05 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y05 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y05 OCA], [http://pdbe.org/5y05 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y05 RCSB], [http://www.ebi.ac.uk/pdbsum/5y05 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y05 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The MSMEG_4306 gene from Mycobacterium smegmatis encodes a protein of unknown function with 242 amino-acid residues that contains a conserved zinc-ribbon domain at its C-terminus. Here, the crystal structure of MSMEG_4306 determined by the single-wavelength anomalous dispersion method using just one zinc ion co-purified with the protein is reported. The crystal structure of MSMEG_4306 shows a coiled-coil helix domain in the N-terminal region and a zinc-ribbon domain in the C-terminal region. A structural similarity search against the Protein Data Bank using MSMEG_4306 as a query revealed two similar structures, namely CT398 from Chlamydia trachomatis and HP0958 from Helicobacter pylori, although they share only approximately 15% sequence identity with MSMEG_4306. Based on comparative analysis, it is predicted that MSMEG_4306 may be involved in secretion systems, possibly by interacting with multiple proteins or nucleic acids.

-	~~Authors: Kumar~~, A., Karthikeyan, S.	+	Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis.,Kumar A, Karthikeyan S Acta Crystallogr F Struct Biol Commun. 2018 Mar 1;74(Pt 3):166-173. doi:, 10.1107/S2053230X18002236. Epub 2018 Feb 26. PMID:29497021<ref>PMID:29497021</ref>

-	~~Description: Structural characterization~~ of ~~msmeg_4306 from Mycobacterium smegmatis~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5y05" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Karthikeyan, S]]		[[Category: Karthikeyan, S]]
	[[Category: Kumar, A]]		[[Category: Kumar, A]]
		+	[[Category: Coiled coil helix]]
		+	[[Category: Hypothetical]]
		+	[[Category: Unknown function]]
		+	[[Category: Zinc ribbon]]
		+	[[Category: Zinc-sad]]

OCA: Protected "5y05" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 15:59:21 GMT

Protected "5y05" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:59, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5y05 is ON HOLD until Paper Publication Authors: Kumar, A., Karthikeyan, S. Description: Structural characterization of msmeg_4306 from Mycobacteri...

OCA — Wed, 27 Sep 2017 15:59:20 GMT

New page: '''Unreleased structure''' The entry 5y05 is ON HOLD until Paper Publication Authors: Kumar, A., Karthikeyan, S. Description: Structural characterization of msmeg_4306 from Mycobacteri...

New page

'''Unreleased structure'''

The entry 5y05 is ON HOLD until Paper Publication

Authors: Kumar, A., Karthikeyan, S.

Description: Structural characterization of msmeg_4306 from Mycobacterium smegmatis
[[Category: Unreleased Structures]]
[[Category: Karthikeyan, S]]
[[Category: Kumar, A]]