5y3x - Revision history

OCA at 08:21, 22 November 2023

OCA — Wed, 22 Nov 2023 08:21:03 GMT

←Older revision		Revision as of 08:21, 22 November 2023
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	==Crystal structure of endo-1,4-beta-xylanase from Caldicellulosiruptor owensensis==		==Crystal structure of endo-1,4-beta-xylanase from Caldicellulosiruptor owensensis==
-	<StructureSection load='5y3x' size='340' side='right' caption='[[5y3x]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='5y3x' size='340' side='right'caption='[[5y3x]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y3x]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Calow Calow~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y3X OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Y3X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y3x]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Caldicellulosiruptor_owensensis_OL Caldicellulosiruptor owensensis OL]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y3X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y3X FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>Calow_0124 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=632518 CALOW])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo~~-1,~~4-beta-xylanase Endo-1,4-beta-xylanase~~]~~, with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.~~2.1~~.8 3.2.1.8] </span>~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y3x OCA], [https://pdbe.org/5y3x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y3x RCSB], [https://www.ebi.ac.uk/pdbsum/5y3x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y3x ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5y3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y3x OCA], [~~http~~://pdbe.org/5y3x PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5y3x RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5y3x PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5y3x ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E4Q2A4_CALOW E4Q2A4_CALOW]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Calow~~]]	+	[[Category: Caldicellulosiruptor owensensis OL]]
-	[[Category: ~~Endo-1,4-beta-xylanase~~]]	+	[[Category: Large Structures]]
-	[[Category: Liu~~, T F~~]]	+	[[Category: Liu TF]]
-	[[Category: Liu, X]]	+	[[Category: Liu X]]
-	[[Category: Sun~~, L C~~]]	+	[[Category: Sun LC]]
-	[[Category: Xin~~, F J~~]]	+	[[Category: Xin FJ]]
-	[[Category: Zhang~~, Y B]]~~	+	[[Category: Zhang YB]]
-	~~[[Category: Gh10 xylanase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Thermostability~~]]	+

OCA at 20:53, 24 January 2018

OCA — Wed, 24 Jan 2018 20:53:12 GMT

←Older revision		Revision as of 20:53, 24 January 2018
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	<StructureSection load='5y3x' size='340' side='right' caption='[[5y3x]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='5y3x' size='340' side='right' caption='[[5y3x]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y3x]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y3X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y3X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y3x]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Calow Calow]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y3X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y3X FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Calow_0124 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632518 CALOW])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y3x OCA], [http://pdbe.org/5y3x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y3x RCSB], [http://www.ebi.ac.uk/pdbsum/5y3x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y3x ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y3x OCA], [http://pdbe.org/5y3x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y3x RCSB], [http://www.ebi.ac.uk/pdbsum/5y3x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y3x ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Calow]]
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Liu, T F]]		[[Category: Liu, T F]]

OCA at 08:31, 27 December 2017

OCA — Wed, 27 Dec 2017 08:31:04 GMT

←Older revision		Revision as of 08:31, 27 December 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5y3x is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of endo-1,4-beta-xylanase from Caldicellulosiruptor owensensis==
		+	<StructureSection load='5y3x' size='340' side='right' caption='[[5y3x]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5y3x]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y3X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y3X FirstGlance]. <br>
		+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y3x OCA], [http://pdbe.org/5y3x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y3x RCSB], [http://www.ebi.ac.uk/pdbsum/5y3x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y3x ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Xylanase (EC 3.2.1.8) is a kind of enzymes that degrade xylan into xylose, which has been widely used in a variety of industrial applications. Particularly, xylanases from thermophilic microorganisms show distinct advantages in the industries which need high temperature conditions. The CoXynA gene, which is identified from thermophilic bacterium Caldicellulosiruptor owensensis, encoding a glycoside hydrolase family 10 xylanase, was overexpressed in Escherichia coli. The recombinant CoXynA showed optimal activity at 90 degrees C and pH 7. Its half-life is about 1 h at 80 degrees C. The activity of CoXynA was not affected by most cations. CoXynA showed distinct substrate specificities for beech wood xylan and birch wood xylan. The crystal structure of CoXynA was solved and the molecular dynamics simulation was performed for CoXynA. The relatively high thermostability of CoXynA is proposed to be the increased overall protein rigidity resulted from the shortened length and reduced fluctuation of Loop 7.

-	~~Authors: Liu~~, X., ~~Sun~~, ~~L.C.~~, Zhang, Y~~.B.~~, ~~Liu~~, T~~.F.~~, ~~Xin~~, F.J.	+	Structural Insights into the Thermophilic Adaption Mechanism of Endo-1,4-beta-Xylanase from Caldicellulosiruptor owensensis.,Liu X, Liu T, Zhang Y, Xin F, Mi S, Wen B, Gu T, Shi X, Wang F, Sun L J Agric Food Chem. 2017 Dec 13. doi: 10.1021/acs.jafc.7b03607. PMID:29236500<ref>PMID:29236500</ref>

-	~~Description: Crystal structure~~ of ~~endo~~-1,4-beta-xylanase ~~from Caldicellulosiruptor owensensis~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5y3x" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Endo-1,4-beta-xylanase]]
		+	[[Category: Liu, T F]]
	[[Category: Liu, X]]		[[Category: Liu, X]]
-	[[Category: Xin, F.J]]	+	[[Category: Sun, L C]]
-	[[Category: Zhang, Y.B]]	+	[[Category: Xin, F J]]
-	[[Category: ~~Liu, T.F~~]]	+	[[Category: Zhang, Y B]]
-	[[Category: ~~Sun, L.C~~]]	+	[[Category: Gh10 xylanase]]
		+	[[Category: Hydrolase]]
		+	[[Category: Thermostability]]

OCA: Protected "5y3x" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 16:06:05 GMT

Protected "5y3x" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:06, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5y3x is ON HOLD until Paper Publication Authors: Liu, X., Sun, L.C., Zhang, Y.B., Liu, T.F., Xin, F.J. Description: Crystal structure of endo-1,4-b...

OCA — Wed, 27 Sep 2017 16:06:04 GMT

New page: '''Unreleased structure''' The entry 5y3x is ON HOLD until Paper Publication Authors: Liu, X., Sun, L.C., Zhang, Y.B., Liu, T.F., Xin, F.J. Description: Crystal structure of endo-1,4-b...

New page

'''Unreleased structure'''

The entry 5y3x is ON HOLD until Paper Publication

Authors: Liu, X., Sun, L.C., Zhang, Y.B., Liu, T.F., Xin, F.J.

Description: Crystal structure of endo-1,4-beta-xylanase from Caldicellulosiruptor owensensis
[[Category: Unreleased Structures]]
[[Category: Liu, X]]
[[Category: Xin, F.J]]
[[Category: Zhang, Y.B]]
[[Category: Liu, T.F]]
[[Category: Sun, L.C]]