5y7y - Revision history

OCA at 10:22, 27 March 2024

OCA — Wed, 27 Mar 2024 10:22:00 GMT

←Older revision		Revision as of 10:22, 27 March 2024
Line 1:		Line 1:

	==Crystal structure of AhRR/ARNT complex==		==Crystal structure of AhRR/ARNT complex==
-	<StructureSection load='5y7y' size='340' side='right' caption='[[5y7y]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='5y7y' size='340' side='right'caption='[[5y7y]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y7y]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bovin Bovin~~] and [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y7Y OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Y7Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y7y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y7Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y7Y FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~AHRR, BHLHE77, KIAA1234 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=9606 HUMAN]), ARNT ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9913 BOVIN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5y7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y7y OCA], [~~http~~://pdbe.org/5y7y PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5y7y RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5y7y PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5y7y ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y7y OCA], [https://pdbe.org/5y7y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y7y RCSB], [https://www.ebi.ac.uk/pdbsum/5y7y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y7y ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/AHRR_HUMAN AHRR_HUMAN]] Mediates dioxin toxicity and is involved in regulation of cell growth and differentiation. Represses the transcription activity of AHR by competing with this transcription factor for heterodimer formation with the ARNT and subsequently binding to the xenobiotic response element (XRE) sequence present in the promoter regulatory region of variety of genes. Represses CYP1A1 by binding the XRE sequence and recruiting ANKRA2, HDAC4 and/or HDAC5. Autoregulates its expression by associating with its own XRE site.<ref>PMID:17890447</ref> <ref>PMID:18172554</ref> [[http://www.uniprot.org/uniprot/ARNT_BOVIN ARNT_BOVIN]] Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens (By similarity). The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia (By similarity).	+	[https://www.uniprot.org/uniprot/AHRR_HUMAN AHRR_HUMAN] Mediates dioxin toxicity and is involved in regulation of cell growth and differentiation. Represses the transcription activity of AHR by competing with this transcription factor for heterodimer formation with the ARNT and subsequently binding to the xenobiotic response element (XRE) sequence present in the promoter regulatory region of variety of genes. Represses CYP1A1 by binding the XRE sequence and recruiting ANKRA2, HDAC4 and/or HDAC5. Autoregulates its expression by associating with its own XRE site.<ref>PMID:17890447</ref> <ref>PMID:18172554</ref>
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	2,3,7,8-Tetrachlorodibenzo-p-dioxin and related compounds are extraordinarily potent environmental toxic pollutants. Most of the 2,3,7,8-tetrachlorodibenzo-p-dioxin toxicities are mediated by aryl hydrocarbon receptor (AhR), a ligand-dependent transcription factor belonging to the basic helix-loop-helix (bHLH) Per-ARNT-Sim (PAS) family. Upon ligand binding, AhR forms a heterodimer with AhR nuclear translocator (ARNT) and induces the expression of genes involved in various biological responses. One of the genes induced by AhR encodes AhR repressor (AhRR), which also forms a heterodimer with ARNT and represses the activation of AhR-dependent transcription. The control of AhR activation is critical for managing AhR-mediated diseases, but the mechanisms by which AhRR represses AhR activation remain poorly understood, because of the lack of structural information. Here, we determined the structure of the AhRR-ARNT heterodimer by X-ray crystallography, which revealed an asymmetric intertwined domain organization presenting structural features that are both conserved and distinct among bHLH-PAS family members. The structures of AhRR-ARNT and AhR-ARNT were similar in the bHLH-PAS-A region, whereas the PAS-B of ARNT in the AhRR-ARNT complex exhibited a different domain arrangement in this family reported so far. The structure clearly disclosed that AhRR competitively represses AhR binding to ARNT and target DNA and further suggested the existence of an AhRR-ARNT-specific repression mechanism. This study provides a structural basis for understanding the mechanism by which AhRR represses AhR-mediated gene transcription.	+
-		+
-	The crystal structure of the AhRR-ARNT heterodimer reveals the structural basis of the repression of AhR-mediated transcription.,Sakurai S, Shimizu T, Ohto U J Biol Chem. 2017 Oct 27;292(43):17609-17616. doi: 10.1074/jbc.M117.812974. Epub , 2017 Sep 13. PMID:28904176<ref>PMID:28904176</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 5y7y" style="background-color:#fffaf0;"></div~~>	+
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bovin~~]]	+	[[Category: Bos taurus]]
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Ohto, U~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Sakurai, S~~]]	+	[[Category: Ohto U]]
-	[[Category: ~~Shimizu, T~~]]	+	[[Category: Sakurai S]]
-	[[Category: ~~Transcription]]~~	+	[[Category: Shimizu T]]
-	~~[[Category: Transcriptional regulation~~]]	+

OCA at 08:24, 22 February 2018

OCA — Thu, 22 Feb 2018 08:24:13 GMT

←Older revision		Revision as of 08:24, 22 February 2018
Line 10:		Line 10:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/AHRR_HUMAN AHRR_HUMAN]] Mediates dioxin toxicity and is involved in regulation of cell growth and differentiation. Represses the transcription activity of AHR by competing with this transcription factor for heterodimer formation with the ARNT and subsequently binding to the xenobiotic response element (XRE) sequence present in the promoter regulatory region of variety of genes. Represses CYP1A1 by binding the XRE sequence and recruiting ANKRA2, HDAC4 and/or HDAC5. Autoregulates its expression by associating with its own XRE site.<ref>PMID:17890447</ref> <ref>PMID:18172554</ref> [[http://www.uniprot.org/uniprot/ARNT_BOVIN ARNT_BOVIN]] Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens (By similarity). The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia (By similarity).		[[http://www.uniprot.org/uniprot/AHRR_HUMAN AHRR_HUMAN]] Mediates dioxin toxicity and is involved in regulation of cell growth and differentiation. Represses the transcription activity of AHR by competing with this transcription factor for heterodimer formation with the ARNT and subsequently binding to the xenobiotic response element (XRE) sequence present in the promoter regulatory region of variety of genes. Represses CYP1A1 by binding the XRE sequence and recruiting ANKRA2, HDAC4 and/or HDAC5. Autoregulates its expression by associating with its own XRE site.<ref>PMID:17890447</ref> <ref>PMID:18172554</ref> [[http://www.uniprot.org/uniprot/ARNT_BOVIN ARNT_BOVIN]] Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens (By similarity). The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	2,3,7,8-Tetrachlorodibenzo-p-dioxin and related compounds are extraordinarily potent environmental toxic pollutants. Most of the 2,3,7,8-tetrachlorodibenzo-p-dioxin toxicities are mediated by aryl hydrocarbon receptor (AhR), a ligand-dependent transcription factor belonging to the basic helix-loop-helix (bHLH) Per-ARNT-Sim (PAS) family. Upon ligand binding, AhR forms a heterodimer with AhR nuclear translocator (ARNT) and induces the expression of genes involved in various biological responses. One of the genes induced by AhR encodes AhR repressor (AhRR), which also forms a heterodimer with ARNT and represses the activation of AhR-dependent transcription. The control of AhR activation is critical for managing AhR-mediated diseases, but the mechanisms by which AhRR represses AhR activation remain poorly understood, because of the lack of structural information. Here, we determined the structure of the AhRR-ARNT heterodimer by X-ray crystallography, which revealed an asymmetric intertwined domain organization presenting structural features that are both conserved and distinct among bHLH-PAS family members. The structures of AhRR-ARNT and AhR-ARNT were similar in the bHLH-PAS-A region, whereas the PAS-B of ARNT in the AhRR-ARNT complex exhibited a different domain arrangement in this family reported so far. The structure clearly disclosed that AhRR competitively represses AhR binding to ARNT and target DNA and further suggested the existence of an AhRR-ARNT-specific repression mechanism. This study provides a structural basis for understanding the mechanism by which AhRR represses AhR-mediated gene transcription.
		+
		+	The crystal structure of the AhRR-ARNT heterodimer reveals the structural basis of the repression of AhR-mediated transcription.,Sakurai S, Shimizu T, Ohto U J Biol Chem. 2017 Oct 27;292(43):17609-17616. doi: 10.1074/jbc.M117.812974. Epub , 2017 Sep 13. PMID:28904176<ref>PMID:28904176</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5y7y" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA: Protected "5y7y" [edit=sysop:move=sysop]

OCA — Wed, 15 Nov 2017 14:35:14 GMT

Protected "5y7y" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:35, 15 November 2017

OCA: New page: ==Crystal structure of AhRR/ARNT complex== == Structural highligh...

OCA — Wed, 15 Nov 2017 14:35:09 GMT

New page: ==Crystal structure of AhRR/ARNT complex== <StructureSection load='5y7y' size='340' side='right' caption='5y7y, resolution 2.40Å' scene=''> == Structural highligh...

New page

==Crystal structure of AhRR/ARNT complex==
<StructureSection load='5y7y' size='340' side='right' caption='[[5y7y]], [[Resolution|resolution]] 2.40Å' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5y7y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y7Y OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y7Y FirstGlance]. 
</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
<tr id='gene'><td class="sblockLbl">[[Gene|Gene:]]</td><td class="sblockDat">AHRR, BHLHE77, KIAA1234 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), ARNT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9913 BOVIN])</td></tr>
<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y7y OCA], [http://pdbe.org/5y7y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y7y RCSB], [http://www.ebi.ac.uk/pdbsum/5y7y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y7y ProSAT]</td></tr>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/AHRR_HUMAN AHRR_HUMAN]] Mediates dioxin toxicity and is involved in regulation of cell growth and differentiation. Represses the transcription activity of AHR by competing with this transcription factor for heterodimer formation with the ARNT and subsequently binding to the xenobiotic response element (XRE) sequence present in the promoter regulatory region of variety of genes. Represses CYP1A1 by binding the XRE sequence and recruiting ANKRA2, HDAC4 and/or HDAC5. Autoregulates its expression by associating with its own XRE site.<ref>PMID:17890447</ref> <ref>PMID:18172554</ref> [[http://www.uniprot.org/uniprot/ARNT_BOVIN ARNT_BOVIN]] Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens (By similarity). The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia (By similarity).
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Bovin]]
[[Category: Human]]
[[Category: Ohto, U]]
[[Category: Sakurai, S]]
[[Category: Shimizu, T]]
[[Category: Transcription]]
[[Category: Transcriptional regulation]]