5y9w - Revision history

OCA at 08:25, 22 November 2023

OCA — Wed, 22 Nov 2023 08:25:13 GMT

←Older revision		Revision as of 08:25, 22 November 2023
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	<StructureSection load='5y9w' size='340' side='right'caption='[[5y9w]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='5y9w' size='340' side='right'caption='[[5y9w]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y9w]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5Y9W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y9w]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y9W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.847Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5y9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9w OCA], [~~http~~://pdbe.org/5y9w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5y9w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5y9w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9w ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9w OCA], [https://pdbe.org/5y9w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y9w RCSB], [https://www.ebi.ac.uk/pdbsum/5y9w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/PRK6_ARATH PRK6_ARATH]] Key receptor for sensing species-specific attractants in cooperation with other pollen receptor-like kinases. Essential for pollen tube reorientation toward attractant peptides.<ref>PMID:26961657</ref> [[http://www.uniprot.org/uniprot/LUR12_ARATH LUR12_ARATH]] Pollen tube attractants guiding pollen tubes to the ovular micropyle. Attracts specifically pollen tubes from A.thaliana, but not those from A.lyrata (PubMed:23271953). Triggers endocytosis of MDIS1 in the pollen tube tip (PubMed:26863186).<ref>PMID:23271953</ref> <ref>PMID:26863186</ref>	+	[https://www.uniprot.org/uniprot/PRK6_ARATH PRK6_ARATH] Key receptor for sensing species-specific attractants in cooperation with other pollen receptor-like kinases. Essential for pollen tube reorientation toward attractant peptides.<ref>PMID:26961657</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arabidopsis thaliana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chai, J]]	+	[[Category: Chai J]]
-	[[Category: Zhang, X]]	+	[[Category: Zhang X]]
-	~~[[Category: Cysteine-rich peptide]]~~	+
-	~~[[Category: Leucine-rich repeat receptor kinase]]~~	+
-	~~[[Category: Plant protein]]~~	+
-	~~[[Category: Pollen tube guidance]]~~	+
-	~~[[Category: Receptor-ligand complex]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 09:14, 21 October 2020

OCA — Wed, 21 Oct 2020 09:14:10 GMT

←Older revision		Revision as of 09:14, 21 October 2020
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	==Crystal 1 for AtLURE1.2-AtPRK6LRR==		==Crystal 1 for AtLURE1.2-AtPRK6LRR==
-	<StructureSection load='5y9w' size='340' side='right' caption='[[5y9w]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='5y9w' size='340' side='right'caption='[[5y9w]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y9w]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9W OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Y9W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y9w]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Y9W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5y9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9w OCA], [http://pdbe.org/5y9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9w RCSB], [http://www.ebi.ac.uk/pdbsum/5y9w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9w ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5y9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9w OCA], [http://pdbe.org/5y9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9w RCSB], [http://www.ebi.ac.uk/pdbsum/5y9w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Chai, J]]		[[Category: Chai, J]]
	[[Category: Zhang, X]]		[[Category: Zhang, X]]

OCA at 08:31, 27 December 2017

OCA — Wed, 27 Dec 2017 08:31:41 GMT

←Older revision		Revision as of 08:31, 27 December 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5y9w is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Crystal 1 for AtLURE1.2-AtPRK6LRR==
		+	<StructureSection load='5y9w' size='340' side='right' caption='[[5y9w]], [[Resolution\|resolution]] 1.85Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5y9w]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y9W FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9w OCA], [http://pdbe.org/5y9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9w RCSB], [http://www.ebi.ac.uk/pdbsum/5y9w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9w ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PRK6_ARATH PRK6_ARATH]] Key receptor for sensing species-specific attractants in cooperation with other pollen receptor-like kinases. Essential for pollen tube reorientation toward attractant peptides.<ref>PMID:26961657</ref> [[http://www.uniprot.org/uniprot/LUR12_ARATH LUR12_ARATH]] Pollen tube attractants guiding pollen tubes to the ovular micropyle. Attracts specifically pollen tubes from A.thaliana, but not those from A.lyrata (PubMed:23271953). Triggers endocytosis of MDIS1 in the pollen tube tip (PubMed:26863186).<ref>PMID:23271953</ref> <ref>PMID:26863186</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Transportation of the immobile sperms directed by pollen tubes to the ovule-enclosed female gametophytes is important for plant sexual reproduction. The defensin-like (DEFL) cysteine-rich peptides (CRPs) LUREs play an essential role in pollen tube attraction to the ovule, though their receptors still remain controversial. Here we provide several lines of biochemical evidence showing that the extracellular domain of the leucine-rich repeat receptor kinase (LRR-RK) PRK6 from Arabidopsis thaliana directly interacts with AtLURE1 peptides. Structural study reveals that a C-terminal loop of the LRR domain (AtPRK6(LRR)) is responsible for recognition of AtLURE1.2, mediated by a set of residues largely conserved among PRK6 homologs from Arabidopsis lyrata and Capsella rubella, supported by in vitro mutagenesis and semi-in-vivo pollen tube growth assays. Our study provides evidence showing that PRK6 functions as a receptor of the LURE peptides in A. thaliana and reveals a unique ligand recognition mechanism of LRR-RKs.

-	~~Authors: Jijie, C~~., ~~Xiaoxiao~~, Z.	+	Structural basis for receptor recognition of pollen tube attraction peptides.,Zhang X, Liu W, Nagae TT, Takeuchi H, Zhang H, Han Z, Higashiyama T, Chai J Nat Commun. 2017 Nov 6;8(1):1331. doi: 10.1038/s41467-017-01323-8. PMID:29109411<ref>PMID:29109411</ref>

-	~~Description: Crystal 1 for AtLURE1~~.2-~~AtPRK6LRR~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Jijie~~, C]]	+	<div class="pdbe-citations 5y9w" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Xiaoxiao, Z~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chai, J]]
		+	[[Category: Zhang, X]]
		+	[[Category: Cysteine-rich peptide]]
		+	[[Category: Leucine-rich repeat receptor kinase]]
		+	[[Category: Plant protein]]
		+	[[Category: Pollen tube guidance]]
		+	[[Category: Receptor-ligand complex]]
		+	[[Category: Transferase]]

OCA at 04:48, 20 December 2017

OCA — Wed, 20 Dec 2017 04:48:31 GMT

←Older revision		Revision as of 04:48, 20 December 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5y9w is ON HOLD	+	The entry 5y9w is ON HOLD until Paper Publication

	Authors: Jijie, C., Xiaoxiao, Z.		Authors: Jijie, C., Xiaoxiao, Z.

OCA: Protected "5y9w" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 16:19:04 GMT

Protected "5y9w" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:19, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5y9w is ON HOLD Authors: Jijie, C., Xiaoxiao, Z. Description: Crystal 1 for AtLURE1.2-AtPRK6LRR Category: Unreleased Structures [[Category: Jij...

OCA — Wed, 27 Sep 2017 16:19:03 GMT

New page: '''Unreleased structure''' The entry 5y9w is ON HOLD Authors: Jijie, C., Xiaoxiao, Z. Description: Crystal 1 for AtLURE1.2-AtPRK6LRR Category: Unreleased Structures [[Category: Jij...

New page

'''Unreleased structure'''

The entry 5y9w is ON HOLD

Authors: Jijie, C., Xiaoxiao, Z.

Description: Crystal 1 for AtLURE1.2-AtPRK6LRR
[[Category: Unreleased Structures]]
[[Category: Jijie, C]]
[[Category: Xiaoxiao, Z]]