5y9y - Revision history

OCA at 10:22, 27 March 2024

OCA — Wed, 27 Mar 2024 10:22:24 GMT

←Older revision		Revision as of 10:22, 27 March 2024
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	<StructureSection load='5y9y' size='340' side='right'caption='[[5y9y]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='5y9y' size='340' side='right'caption='[[5y9y]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y9y]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9Y OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5Y9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y9y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylacidiphilum_infernorum_V4 Methylacidiphilum infernorum V4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y9Y FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.599Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5y9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9y OCA], [~~http~~://pdbe.org/5y9y PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5y9y RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5y9y PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9y ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9y OCA], [https://pdbe.org/5y9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y9y RCSB], [https://www.ebi.ac.uk/pdbsum/5y9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9y ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/B3DUR4_METI4 B3DUR4_METI4]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chung, H S~~]]	+	[[Category: Methylacidiphilum infernorum V4]]
-	[[Category: ~~Joo, S H~~]]	+	[[Category: Chung HS]]
-	[[Category: ~~Pemble, C W~~]]	+	[[Category: Joo SH]]
-	[[Category: ~~Raetz, C R~~]]	+	[[Category: Pemble CW]]
-	[[Category: ~~Biosynthetic protein]]~~	+	[[Category: Raetz CR]]
-	~~[[Category: Deoxysugar dioxygenase]]~~	+
-	~~[[Category: Kdo2-lipid a dioxygenase]]~~	+
-	~~[[Category: Lps biosynthesis~~]]	+

OCA at 09:14, 21 October 2020

OCA — Wed, 21 Oct 2020 09:14:14 GMT

←Older revision		Revision as of 09:14, 21 October 2020
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	==Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)==		==Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)==
-	<StructureSection load='5y9y' size='340' side='right' caption='[[5y9y]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='5y9y' size='340' side='right'caption='[[5y9y]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y9y]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9Y OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Y9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y9y]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9Y OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Y9Y FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5y9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9y OCA], [http://pdbe.org/5y9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9y RCSB], [http://www.ebi.ac.uk/pdbsum/5y9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9y ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5y9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9y OCA], [http://pdbe.org/5y9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9y RCSB], [http://www.ebi.ac.uk/pdbsum/5y9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9y ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Chung, H S]]		[[Category: Chung, H S]]
	[[Category: Joo, S H]]		[[Category: Joo, S H]]

OCA at 06:44, 31 October 2018

OCA — Wed, 31 Oct 2018 06:44:15 GMT

←Older revision		Revision as of 06:44, 31 October 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5y9y is ON HOLD until Oct 25 2019~~	+	==Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)==
-		+	<StructureSection load='5y9y' size='340' side='right' caption='[[5y9y]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5y9y]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y9Y FirstGlance]. <br>
-	~~Description:~~ Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9y OCA], [http://pdbe.org/5y9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9y RCSB], [http://www.ebi.ac.uk/pdbsum/5y9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9y ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Joo~~, S.H]]	+	</table>
-	[[~~Category~~: ~~Raetz~~, C.R]]	+	__TOC__
-	[[Category: Chung, H.S]]	+	</StructureSection>
-	[[Category: Pemble, C.W]]	+	[[Category: Chung, H S]]
		+	[[Category: Joo, S H]]
		+	[[Category: Pemble, C W]]
		+	[[Category: Raetz, C R]]
		+	[[Category: Biosynthetic protein]]
		+	[[Category: Deoxysugar dioxygenase]]
		+	[[Category: Kdo2-lipid a dioxygenase]]
		+	[[Category: Lps biosynthesis]]

OCA at 16:49, 1 August 2018

OCA — Wed, 01 Aug 2018 16:49:49 GMT

←Older revision		Revision as of 16:49, 1 August 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5y9y is ON HOLD until ~~Aug 29~~ 2019	+	The entry 5y9y is ON HOLD until Oct 25 2019

	Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R.		Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R.
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Joo, S.H]]		[[Category: Joo, S.H]]
-	[[Category: Pemble, C.W]]
	[[Category: Raetz, C.R]]		[[Category: Raetz, C.R]]
	[[Category: Chung, H.S]]		[[Category: Chung, H.S]]
		+	[[Category: Pemble, C.W]]

OCA at 05:21, 11 October 2017

OCA — Wed, 11 Oct 2017 05:21:44 GMT

←Older revision		Revision as of 05:21, 11 October 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5y9y is ON HOLD	+	The entry 5y9y is ON HOLD until Aug 29 2019

	Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R.		Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R.
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Joo, S.H]]		[[Category: Joo, S.H]]
-	[[Category: Raetz, C.R]]
	[[Category: Pemble, C.W]]		[[Category: Pemble, C.W]]
		+	[[Category: Raetz, C.R]]
	[[Category: Chung, H.S]]		[[Category: Chung, H.S]]

OCA: Protected "5y9y" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 16:19:17 GMT

Protected "5y9y" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:19, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5y9y is ON HOLD Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R. Description: Crystal structure of the Kdo hydroxylase KdoO, a non-heme F...

OCA — Wed, 27 Sep 2017 16:19:16 GMT

New page: '''Unreleased structure''' The entry 5y9y is ON HOLD Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R. Description: Crystal structure of the Kdo hydroxylase KdoO, a non-heme F...

New page

'''Unreleased structure'''

The entry 5y9y is ON HOLD

Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R.

Description: Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)
[[Category: Unreleased Structures]]
[[Category: Joo, S.H]]
[[Category: Raetz, C.R]]
[[Category: Pemble, C.W]]
[[Category: Chung, H.S]]