5yan - Revision history

OCA at 09:14, 21 October 2020

OCA — Wed, 21 Oct 2020 09:14:37 GMT

←Older revision		Revision as of 09:14, 21 October 2020
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	==Deconstructing the Salt-Bridge Network of a Computationally Designed Collagen Heterotrimer==		==Deconstructing the Salt-Bridge Network of a Computationally Designed Collagen Heterotrimer==
-	<StructureSection load='5yan' size='340' side='right' caption='[[5yan]], [[Resolution\|resolution]] 1.77Å' scene=''>	+	<StructureSection load='5yan' size='340' side='right'caption='[[5yan]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yan]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YAN OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YAN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yan]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YAN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YAN FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yan OCA], [http://pdbe.org/5yan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yan RCSB], [http://www.ebi.ac.uk/pdbsum/5yan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yan ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5yan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yan OCA], [http://pdbe.org/5yan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yan RCSB], [http://www.ebi.ac.uk/pdbsum/5yan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yan ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5yan" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5yan" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Collagen 3D structures\|Collagen 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Fan, S]]		[[Category: Fan, S]]
	[[Category: Collagen]]		[[Category: Collagen]]

OCA at 08:31, 26 December 2018

OCA — Wed, 26 Dec 2018 08:31:19 GMT

←Older revision		Revision as of 08:31, 26 December 2018
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yan OCA], [http://pdbe.org/5yan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yan RCSB], [http://www.ebi.ac.uk/pdbsum/5yan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yan ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yan OCA], [http://pdbe.org/5yan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yan RCSB], [http://www.ebi.ac.uk/pdbsum/5yan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yan ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	One-quarter of the 28 types of natural collagen exist as heterotrimers. The oligomerization state of collagen affects the structure and mechanics of the extracellular matrix, providing essential cues to modulate biological and pathological processes. A lack of high-resolution structural information limits our mechanistic understanding of collagen heterospecific self-assembly. Here, the 1.77-A resolution structure of a synthetic heterotrimer demonstrates the balance of intermolecular electrostatics and hydrogen bonding that affects collagen stability and heterospecificity of assembly. Atomistic simulations and mutagenesis based on the solved structure are used to explore the contributions of specific interactions to energetics. A predictive model of collagen stability and specificity is developed for engineering novel collagen structures.
		+
		+	How electrostatic networks modulate specificity and stability of collagen.,Zheng H, Lu C, Lan J, Fan S, Nanda V, Xu F Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):6207-6212. doi:, 10.1073/pnas.1802171115. Epub 2018 May 29. PMID:29844169<ref>PMID:29844169</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5yan" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:35, 14 June 2018

OCA — Thu, 14 Jun 2018 07:35:45 GMT

←Older revision		Revision as of 07:35, 14 June 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 5yan is ~~ON HOLD until Paper Publication~~	+	==Deconstructing the Salt-Bridge Network of a Computationally Designed Collagen Heterotrimer==
-		+	<StructureSection load='5yan' size='340' side='right' caption='[[5yan]], [[Resolution\|resolution]] 1.77Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5yan]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YAN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YAN FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yan OCA], [http://pdbe.org/5yan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yan RCSB], [http://www.ebi.ac.uk/pdbsum/5yan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yan ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Fan, S]]
		+	[[Category: Collagen]]
		+	[[Category: Heterotrimer]]
		+	[[Category: Ion pair]]
		+	[[Category: Structural protein]]

OCA at 06:22, 22 November 2017

OCA — Wed, 22 Nov 2017 06:22:26 GMT

←Older revision		Revision as of 06:22, 22 November 2017
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yan is ON HOLD	+	The entry 5yan is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5yan" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 16:20:40 GMT

Protected "5yan" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:20, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5yan is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 27 Sep 2017 16:20:39 GMT

New page: '''Unreleased structure''' The entry 5yan is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5yan is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]