5yem - Revision history

OCA at 08:28, 22 November 2023

OCA — Wed, 22 Nov 2023 08:28:21 GMT

←Older revision		Revision as of 08:28, 22 November 2023
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	<StructureSection load='5yem' size='340' side='right'caption='[[5yem]], [[Resolution\|resolution]] 1.49Å' scene=''>		<StructureSection load='5yem' size='340' side='right'caption='[[5yem]], [[Resolution\|resolution]] 1.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yem]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_16463 Atcc 16463~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5YEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yem]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycothermus_thermophilus Mycothermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YEM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.49Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http:~~/~~/en.wikipedia.org/wiki/Catalase Catalase]~~, ~~with EC number [http~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yem OCA], [~~http~~://pdbe.org/5yem PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yem RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yem PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yem ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yem OCA], [https://pdbe.org/5yem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yem RCSB], [https://www.ebi.ac.uk/pdbsum/5yem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yem ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/M4GGR5_9PEZI M4GGR5_9PEZI]] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142] Serves to protect cells from the toxic effects of hydrogen peroxide.[PIRNR:PIRNR038927]	+	[https://www.uniprot.org/uniprot/M4GGR5_9PEZI M4GGR5_9PEZI] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142] Serves to protect cells from the toxic effects of hydrogen peroxide.[PIRNR:PIRNR038927]

	==See Also==		==See Also==
Line 15:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 16463]]
-	[[Category: Catalase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Balci, S~~]]	+	[[Category: Mycothermus thermophilus]]
-	[[Category: ~~Goc, G~~]]	+	[[Category: Balci S]]
-	[[Category: ~~Karakus, Y Yuzugullu~~]]	+	[[Category: Goc G]]
-	[[Category: Pearson~~, A R~~]]	+	[[Category: Pearson AR]]
-	[[Category: Yorke, B]]	+	[[Category: Yorke B]]
-	[[Category: ~~Lateral channel]]~~	+	[[Category: Yuzugullu Karakus Y]]
-	~~[[Category: Mutant]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Phenol oxidase~~]]	+

OCA at 09:17, 21 October 2020

OCA — Wed, 21 Oct 2020 09:17:06 GMT

←Older revision		Revision as of 09:17, 21 October 2020
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	==CATPO mutant - T188F==		==CATPO mutant - T188F==
-	<StructureSection load='5yem' size='340' side='right' caption='[[5yem]], [[Resolution\|resolution]] 1.49Å' scene=''>	+	<StructureSection load='5yem' size='340' side='right'caption='[[5yem]], [[Resolution\|resolution]] 1.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yem]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_16463 Atcc 16463]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEM OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yem]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_16463 Atcc 16463]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEM OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YEM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yem OCA], [http://pdbe.org/5yem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yem RCSB], [http://www.ebi.ac.uk/pdbsum/5yem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yem ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yem OCA], [http://pdbe.org/5yem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yem RCSB], [http://www.ebi.ac.uk/pdbsum/5yem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yem ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/M4GGR5_9PEZI M4GGR5_9PEZI]] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142] Serves to protect cells from the toxic effects of hydrogen peroxide.[PIRNR:PIRNR038927]		[[http://www.uniprot.org/uniprot/M4GGR5_9PEZI M4GGR5_9PEZI]] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142] Serves to protect cells from the toxic effects of hydrogen peroxide.[PIRNR:PIRNR038927]
		+
		+	==See Also==
		+	*[[Catalase 3D structures\|Catalase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Atcc 16463]]		[[Category: Atcc 16463]]
	[[Category: Catalase]]		[[Category: Catalase]]
		+	[[Category: Large Structures]]
	[[Category: Balci, S]]		[[Category: Balci, S]]
	[[Category: Goc, G]]		[[Category: Goc, G]]

OCA at 19:03, 1 August 2018

OCA — Wed, 01 Aug 2018 19:03:59 GMT

←Older revision		Revision as of 19:03, 1 August 2018
Line 3:		Line 3:
	<StructureSection load='5yem' size='340' side='right' caption='[[5yem]], [[Resolution\|resolution]] 1.49Å' scene=''>		<StructureSection load='5yem' size='340' side='right' caption='[[5yem]], [[Resolution\|resolution]] 1.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yem]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yem]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_16463 Atcc 16463]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YEM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span></td></tr>
Line 12:		Line 12:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 16463]]
	[[Category: Catalase]]		[[Category: Catalase]]
	[[Category: Balci, S]]		[[Category: Balci, S]]

OCA at 07:31, 18 July 2018

OCA — Wed, 18 Jul 2018 07:31:22 GMT

←Older revision		Revision as of 07:31, 18 July 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5yem is ~~ON HOLD until Paper Publication~~	+	==CATPO mutant - T188F==
-		+	<StructureSection load='5yem' size='340' side='right' caption='[[5yem]], [[Resolution\|resolution]] 1.49Å' scene=''>
-	~~Authors~~: ~~Yuzugullu Karakus~~, Y., ~~Balci~~, S., ~~Goc, G~~., ~~Pearson, A~~.R., ~~Yorke, B~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5yem]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YEM FirstGlance]. <br>
-	~~Description: CATPO mutant -T188F~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span></td></tr>
-	[[Category: ~~Pearson, A.R~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yem OCA], [http://pdbe.org/5yem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yem RCSB], [http://www.ebi.ac.uk/pdbsum/5yem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yem ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/M4GGR5_9PEZI M4GGR5_9PEZI]] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142] Serves to protect cells from the toxic effects of hydrogen peroxide.[PIRNR:PIRNR038927]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Catalase]]
	[[Category: Balci, S]]		[[Category: Balci, S]]
-	[[Category: Yuzugullu Karakus, Y]]
	[[Category: Goc, G]]		[[Category: Goc, G]]
		+	[[Category: Karakus, Y Yuzugullu]]
		+	[[Category: Pearson, A R]]
	[[Category: Yorke, B]]		[[Category: Yorke, B]]
		+	[[Category: Lateral channel]]
		+	[[Category: Mutant]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Phenol oxidase]]

OCA at 06:24, 8 November 2017

OCA — Wed, 08 Nov 2017 06:24:24 GMT

←Older revision		Revision as of 06:24, 8 November 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yem is ON HOLD	+	The entry 5yem is ON HOLD until Paper Publication

	Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B.		Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B.
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Pearson, A.R]]		[[Category: Pearson, A.R]]
-	[[Category: Goc, G]]
-	[[Category: Yorke, B]]
	[[Category: Balci, S]]		[[Category: Balci, S]]
	[[Category: Yuzugullu Karakus, Y]]		[[Category: Yuzugullu Karakus, Y]]
		+	[[Category: Goc, G]]
		+	[[Category: Yorke, B]]

OCA: Protected "5yem" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 16:28:44 GMT

Protected "5yem" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:28, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5yem is ON HOLD Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B. Description: CATPO mutant -T188F [[Category: Unrelease...

OCA — Wed, 27 Sep 2017 16:28:43 GMT

New page: '''Unreleased structure''' The entry 5yem is ON HOLD Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B. Description: CATPO mutant -T188F [[Category: Unrelease...

New page

'''Unreleased structure'''

The entry 5yem is ON HOLD

Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B.

Description: CATPO mutant -T188F
[[Category: Unreleased Structures]]
[[Category: Pearson, A.R]]
[[Category: Goc, G]]
[[Category: Yorke, B]]
[[Category: Balci, S]]
[[Category: Yuzugullu Karakus, Y]]