5yfy - Revision history

OCA at 08:29, 22 November 2023

OCA — Wed, 22 Nov 2023 08:29:07 GMT

←Older revision		Revision as of 08:29, 22 November 2023
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	<StructureSection load='5yfy' size='340' side='right'caption='[[5yfy]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5yfy' size='340' side='right'caption='[[5yfy]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yfy]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YFY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5YFY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yfy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YFY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8UL:1-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-fluoranyl-phenyl]piperidine-4-carboxylic+acid'>8UL</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycine_hydroxymethyltransferase Glycine hydroxymethyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.1 2.1.2.1] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8UL:1-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-fluoranyl-phenyl]piperidine-4-carboxylic+acid'>8UL</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5yfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yfy OCA], [~~http~~://pdbe.org/5yfy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yfy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yfy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yfy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yfy OCA], [https://pdbe.org/5yfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yfy RCSB], [https://www.ebi.ac.uk/pdbsum/5yfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yfy ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A5K8L9_PLAVS A5K8L9_PLAVS]
		+
		+	==See Also==
		+	*[[Serine hydroxymethyltransferase 3D structures\|Serine hydroxymethyltransferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Glycine hydroxymethyltransferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chitnumsub, P]]	+	[[Category: Plasmodium vivax]]
-	[[Category: Diederich, F]]	+	[[Category: Chitnumsub P]]
-	[[Category: Jaruwat, A]]	+	[[Category: Diederich F]]
-	[[Category: Leartsakulpanich, U]]	+	[[Category: Jaruwat A]]
-	[[Category: Schwertz, G]]	+	[[Category: Leartsakulpanich U]]
-	~~[[Category: Alpha and beta protein]]~~	+	[[Category: Schwertz G]]
-	~~[[Category: Inhibitor]]~~	+
-	~~[[Category: Methyltransferase activity]]~~	+
-	~~[[Category: Transferase]]~~	+
-	~~[[Category: Transferase-inhibitor complex~~]]	+

OCA at 09:18, 21 October 2020

OCA — Wed, 21 Oct 2020 09:18:12 GMT

←Older revision		Revision as of 09:18, 21 October 2020
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	==Plasmodium vivax SHMT bound with PLP-glycine and GS625==		==Plasmodium vivax SHMT bound with PLP-glycine and GS625==
-	<StructureSection load='5yfy' size='340' side='right' caption='[[5yfy]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5yfy' size='340' side='right'caption='[[5yfy]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yfy]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YFY OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YFY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yfy]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YFY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YFY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8UL:1-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-fluoranyl-phenyl]piperidine-4-carboxylic+acid'>8UL</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8UL:1-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-fluoranyl-phenyl]piperidine-4-carboxylic+acid'>8UL</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycine_hydroxymethyltransferase Glycine hydroxymethyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.1 2.1.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycine_hydroxymethyltransferase Glycine hydroxymethyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.1 2.1.2.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yfy OCA], [http://pdbe.org/5yfy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yfy RCSB], [http://www.ebi.ac.uk/pdbsum/5yfy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yfy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5yfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yfy OCA], [http://pdbe.org/5yfy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yfy RCSB], [http://www.ebi.ac.uk/pdbsum/5yfy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yfy ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Glycine hydroxymethyltransferase]]		[[Category: Glycine hydroxymethyltransferase]]
		+	[[Category: Large Structures]]
	[[Category: Chitnumsub, P]]		[[Category: Chitnumsub, P]]
	[[Category: Diederich, F]]		[[Category: Diederich, F]]

OCA at 07:51, 26 September 2018

OCA — Wed, 26 Sep 2018 07:51:09 GMT

←Older revision		Revision as of 07:51, 26 September 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5yfy ~~is ON HOLD until Paper Publication~~	+	==Plasmodium vivax SHMT bound with PLP-glycine and GS625==
-		+	<StructureSection load='5yfy' size='340' side='right' caption='[[5yfy]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~Authors~~: ~~Chitnumsub, P~~.~~, Jaruwat, A~~.~~, Leartsakulpanich, U~~.~~, Schwertz, G~~., ~~Diederich~~, F.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5yfy]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YFY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YFY FirstGlance]. <br>
-	~~Description~~: ~~Plasmodium vivax SHMT bound~~ with ~~PLP~~-~~glycine and GS625~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8UL:1-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-fluoranyl-phenyl]piperidine-4-carboxylic+acid'>8UL</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycine_hydroxymethyltransferase Glycine hydroxymethyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.1 2.1.2.1] </span></td></tr>
-	[[Category: ~~Jaruwat, A~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yfy OCA], [http://pdbe.org/5yfy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yfy RCSB], [http://www.ebi.ac.uk/pdbsum/5yfy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yfy ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Glycine hydroxymethyltransferase]]
	[[Category: Chitnumsub, P]]		[[Category: Chitnumsub, P]]
	[[Category: Diederich, F]]		[[Category: Diederich, F]]
		+	[[Category: Jaruwat, A]]
		+	[[Category: Leartsakulpanich, U]]
	[[Category: Schwertz, G]]		[[Category: Schwertz, G]]
-	[[Category: ~~Leartsakulpanich, U~~]]	+	[[Category: Alpha and beta protein]]
		+	[[Category: Inhibitor]]
		+	[[Category: Methyltransferase activity]]
		+	[[Category: Transferase]]
		+	[[Category: Transferase-inhibitor complex]]

OCA at 05:34, 25 October 2017

OCA — Wed, 25 Oct 2017 05:34:43 GMT

←Older revision		Revision as of 05:34, 25 October 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yfy is ON HOLD	+	The entry 5yfy is ON HOLD until Paper Publication

	Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.		Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Jaruwat, A]]		[[Category: Jaruwat, A]]
-	[[Category: Leartsakulpanich, U]]
-	[[Category: Schwertz, G]]
	[[Category: Chitnumsub, P]]		[[Category: Chitnumsub, P]]
	[[Category: Diederich, F]]		[[Category: Diederich, F]]
		+	[[Category: Schwertz, G]]
		+	[[Category: Leartsakulpanich, U]]

OCA: Protected "5yfy" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 16:31:32 GMT

Protected "5yfy" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:31, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5yfy is ON HOLD Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F. Description: Plasmodium vivax SHMT bound wi...

OCA — Wed, 27 Sep 2017 16:31:31 GMT

New page: '''Unreleased structure''' The entry 5yfy is ON HOLD Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F. Description: Plasmodium vivax SHMT bound wi...

New page

'''Unreleased structure'''

The entry 5yfy is ON HOLD

Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.

Description: Plasmodium vivax SHMT bound with PLP-glycine and GS625
[[Category: Unreleased Structures]]
[[Category: Jaruwat, A]]
[[Category: Leartsakulpanich, U]]
[[Category: Schwertz, G]]
[[Category: Chitnumsub, P]]
[[Category: Diederich, F]]