5ykj - Revision history

OCA at 07:29, 6 November 2019

OCA — Wed, 06 Nov 2019 07:29:11 GMT

←Older revision		Revision as of 07:29, 6 November 2019
Line 1:		Line 1:

	==Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems==		==Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems==
-	<StructureSection load='5ykj' size='340' side='right' caption='[[5ykj]], [[Resolution\|resolution]] 1.53Å' scene=''>	+	<StructureSection load='5ykj' size='340' side='right'caption='[[5ykj]], [[Resolution\|resolution]] 1.53Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ykj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ykj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PRX1, YBL064C, YBL0503, YBL0524 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ykj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ykj OCA], [http://pdbe.org/5ykj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ykj RCSB], [http://www.ebi.ac.uk/pdbsum/5ykj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ykj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ykj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ykj OCA], [http://pdbe.org/5ykj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ykj RCSB], [http://www.ebi.ac.uk/pdbsum/5ykj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ykj ProSAT]</span></td></tr>
Line 15:		Line 16:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Baker's yeast]]
		+	[[Category: Large Structures]]
	[[Category: Peroxiredoxin]]		[[Category: Peroxiredoxin]]
	[[Category: Bao, R]]		[[Category: Bao, R]]

OCA at 05:44, 24 October 2018

OCA — Wed, 24 Oct 2018 05:44:24 GMT

←Older revision		Revision as of 05:44, 24 October 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5ykj ~~is ON HOLD until Oct 23 2019~~	+	==Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems==
-		+	<StructureSection load='5ykj' size='340' side='right' caption='[[5ykj]], [[Resolution\|resolution]] 1.53Å' scene=''>
-	~~Authors~~: ~~Li, C~~.C.~~, Yang, J~~.~~, Yang, M~~.J.~~, Liu, L~~.~~, Peng, C~~.T.~~, Li, T~~., ~~He, L~~.H., ~~Song, Y~~.J., ~~Zhu, Y~~.B., ~~Zhao~~, N.L., ~~Zhao, C~~., ~~Bao, R~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5ykj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKJ FirstGlance]. <br>
-	~~Description~~: ~~Structural basis of~~ the ~~thiol resolving mechanism~~ in ~~yeast~~ mitochondrial 1-~~Cys peroxiredoxin via glutathione~~/~~thioredoxin systems~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
-	[[Category: Li, C.C]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ykj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ykj OCA], [http://pdbe.org/5ykj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ykj RCSB], [http://www.ebi.ac.uk/pdbsum/5ykj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ykj ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PRX1_YEAST PRX1_YEAST]] Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. Involved in mitochondrial protection of cadmium-induced oxidative stress.<ref>PMID:10821871</ref> <ref>PMID:19332553</ref> <ref>PMID:20059400</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Peroxiredoxin]]
		+	[[Category: Bao, R]]
		+	[[Category: He, L H]]
		+	[[Category: Li, C C]]
		+	[[Category: Li, T]]
	[[Category: Liu, L]]		[[Category: Liu, L]]
		+	[[Category: Peng, C T]]
		+	[[Category: Song, Y J]]
	[[Category: Yang, J]]		[[Category: Yang, J]]
		+	[[Category: Yang, M J]]
	[[Category: Zhao, C]]		[[Category: Zhao, C]]
-	[[Category: He, L.H]]	+	[[Category: Zhao, N L]]
-	[[Category: ~~Peng, C.T]]~~	+	[[Category: Zhu, Y B]]
-	~~[[Category: Song~~, Y.J]]	+	[[Category: 1-cys peroxiredoxin]]
-	[[Category: ~~Zhao, N.L~~]]	+	[[Category: Glutathione]]
-	[[Category: ~~Li, T~~]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: ~~Zhu, Y.B~~]]	+	[[Category: Thioredoxin]]
-	[[Category: ~~Bao, R~~]]	+	[[Category: Transferase]]
-	[[Category: ~~Yang, M.J~~]]	+

OCA at 06:06, 17 October 2018

OCA — Wed, 17 Oct 2018 06:06:26 GMT

←Older revision		Revision as of 06:06, 17 October 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5ykj is ON HOLD until Oct 14 2019	+	The entry 5ykj is ON HOLD until Oct 23 2019

	Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C., Bao, R.		Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C., Bao, R.

OCA at 03:34, 8 March 2018

OCA — Thu, 08 Mar 2018 03:34:29 GMT

←Older revision		Revision as of 03:34, 8 March 2018
Line 3:		Line 3:
	The entry 5ykj is ON HOLD until Oct 14 2019		The entry 5ykj is ON HOLD until Oct 14 2019

-	Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C.	+	Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C., Bao, R.

	Description: Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems		Description: Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems
Line 17:		Line 17:
	[[Category: Li, T]]		[[Category: Li, T]]
	[[Category: Zhu, Y.B]]		[[Category: Zhu, Y.B]]
		+	[[Category: Bao, R]]
	[[Category: Yang, M.J]]		[[Category: Yang, M.J]]

OCA at 04:54, 29 November 2017

OCA — Wed, 29 Nov 2017 04:54:20 GMT

←Older revision		Revision as of 04:54, 29 November 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5ykj is ON HOLD	+	The entry 5ykj is ON HOLD until Oct 14 2019

	Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C.		Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C.

OCA at 06:25, 8 November 2017

OCA — Wed, 08 Nov 2017 06:25:13 GMT

←Older revision		Revision as of 06:25, 8 November 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5ykj is ON HOLD ~~until Oct 14 2019~~	+	The entry 5ykj is ON HOLD

-	Authors: Li, C.C., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B.	+	Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C.

-	Description: ~~Mechanistic insight into the regulation~~ of ~~Pseudomonas aeruginosa aspartate kinase~~	+	Description: Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Li, C.C]]
	[[Category: Liu, L]]		[[Category: Liu, L]]
		+	[[Category: Yang, J]]
		+	[[Category: Zhao, C]]
	[[Category: He, L.H]]		[[Category: He, L.H]]
-	[[Category: Li, T]]
-	[[Category: Zhu, Y.B]]
-	[[Category: Li, C.C]]
	[[Category: Peng, C.T]]		[[Category: Peng, C.T]]
	[[Category: Song, Y.J]]		[[Category: Song, Y.J]]
		+	[[Category: Zhao, N.L]]
		+	[[Category: Li, T]]
		+	[[Category: Zhu, Y.B]]
	[[Category: Yang, M.J]]		[[Category: Yang, M.J]]

OCA: Protected "5ykj" [edit=sysop:move=sysop]

OCA — Wed, 25 Oct 2017 05:38:00 GMT

Protected "5ykj" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:38, 25 October 2017

OCA: New page: '''Unreleased structure''' The entry 5ykj is ON HOLD until Oct 14 2019 Authors: Li, C.C., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B. Description: Mechanis...

OCA — Wed, 25 Oct 2017 05:37:59 GMT

New page: '''Unreleased structure''' The entry 5ykj is ON HOLD until Oct 14 2019 Authors: Li, C.C., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B. Description: Mechanis...

New page

'''Unreleased structure'''

The entry 5ykj is ON HOLD until Oct 14 2019

Authors: Li, C.C., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B.

Description: Mechanistic insight into the regulation of Pseudomonas aeruginosa aspartate kinase
[[Category: Unreleased Structures]]
[[Category: Liu, L]]
[[Category: He, L.H]]
[[Category: Li, T]]
[[Category: Zhu, Y.B]]
[[Category: Li, C.C]]
[[Category: Peng, C.T]]
[[Category: Song, Y.J]]
[[Category: Yang, M.J]]