5yku - Revision history

OCA at 12:33, 13 March 2019

OCA — Wed, 13 Mar 2019 12:33:07 GMT

←Older revision		Revision as of 12:33, 13 March 2019
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	==The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Zn ions==		==The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Zn ions==
-	<StructureSection load='5yku' size='340' side='right' caption='[[5yku]], [[Resolution\|resolution]] 1.39Å' scene=''>	+	<StructureSection load='5yku' size='340' side='right'caption='[[5yku]], [[Resolution\|resolution]] 1.39Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5yku]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mrnv Mrnv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKU FirstGlance]. <br>		<table><tr><td colspan='2'>[[5yku]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mrnv Mrnv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKU FirstGlance]. <br>
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yku OCA], [http://pdbe.org/5yku PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yku RCSB], [http://www.ebi.ac.uk/pdbsum/5yku PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yku ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yku OCA], [http://pdbe.org/5yku PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yku RCSB], [http://www.ebi.ac.uk/pdbsum/5yku PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yku ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Shrimp nodaviruses, including Penaeus vannamei (PvNV) and Macrobrachium rosenbergii nodaviruses (MrNV), cause white-tail disease in shrimps, with high mortality. The viral capsid structure determines viral assembly and host specificity during infections. Here, we show cryo-EM structures of T = 3 and T = 1 PvNV-like particles (PvNV-LPs), crystal structures of the protrusion-domains (P-domains) of PvNV and MrNV, and the crystal structure of the N-ARM-PvNV shell-domain (S-domain) in T = 1 subviral particles. The capsid protein of PvNV reveals five domains: the P-domain with a new jelly-roll structure forming cuboid-like spikes; the jelly-roll S-domain with two calcium ions; the linker between the S- and P-domains exhibiting new cross and parallel conformations; the N-arm interacting with nucleotides organized along icosahedral two-fold axes; and a disordered region comprising the basic N-terminal arginine-rich motif (N-ARM) interacting with RNA. The N-ARM controls T = 3 and T = 1 assemblies. Increasing the N/C-termini flexibility leads to particle polymorphism. Linker flexibility may influence the dimeric-spike arrangement.
		+
		+	The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.,Chen NC, Yoshimura M, Miyazaki N, Guan HH, Chuankhayan P, Lin CC, Chen SK, Lin PJ, Huang YC, Iwasaki K, Nakagawa A, Chan SI, Chen CJ Commun Biol. 2019 Feb 20;2:72. doi: 10.1038/s42003-019-0311-z. eCollection 2019. PMID:30820467<ref>PMID:30820467</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5yku" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Mrnv]]		[[Category: Mrnv]]
	[[Category: Chen, C J]]		[[Category: Chen, C J]]

OCA at 15:51, 27 February 2019

OCA — Wed, 27 Feb 2019 15:51:43 GMT

←Older revision		Revision as of 15:51, 27 February 2019
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	<StructureSection load='5yku' size='340' side='right' caption='[[5yku]], [[Resolution\|resolution]] 1.39Å' scene=''>		<StructureSection load='5yku' size='340' side='right' caption='[[5yku]], [[Resolution\|resolution]] 1.39Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yku]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yku]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mrnv Mrnv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Mrnv]]
	[[Category: Chen, C J]]		[[Category: Chen, C J]]
	[[Category: Chen, N C]]		[[Category: Chen, N C]]

OCA at 05:44, 24 October 2018

OCA — Wed, 24 Oct 2018 05:44:29 GMT

←Older revision		Revision as of 05:44, 24 October 2018
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-	'''Unreleased structure'''

-	The ~~entry~~ 5yku is ~~ON HOLD~~	+	==The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Zn ions==
-		+	<StructureSection load='5yku' size='340' side='right' caption='[[5yku]], [[Resolution\|resolution]] 1.39Å' scene=''>
-	~~Authors~~: ~~Chen, N~~.C.~~, Yoshimura, M~~., ~~Lin, C~~.C., ~~Guan~~, H.H., ~~Chuankhayan, P~~., Chen, C.J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5yku]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YKU FirstGlance]. <br>
-	~~Description~~: ~~The crystal structure of Macrobrachium rosenbergii nodavirus~~ P~~-domain with Zn ions~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yku OCA], [http://pdbe.org/5yku PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yku RCSB], [http://www.ebi.ac.uk/pdbsum/5yku PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yku ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chen, C J]]
		+	[[Category: Chen, N C]]
		+	[[Category: Chuankhayan, P]]
		+	[[Category: Guan, H H]]
		+	[[Category: Lin, C C]]
	[[Category: Yoshimura, M]]		[[Category: Yoshimura, M]]
-	[[Category: ~~Chen, N.C~~]]	+	[[Category: Protrusion domain of viral capsid protein]]
-	[[Category: ~~Guan, H.H]]~~	+	[[Category: Viral protein]]
-	~~[[Category: Lin, C.C]]~~	+
-	~~[[Category: Chen, C.J]]~~	+
-	~~[[Category: Chuankhayan, P~~]]	+

OCA: Protected "5yku" [edit=sysop:move=sysop]

OCA — Wed, 25 Oct 2017 05:38:52 GMT

Protected "5yku" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:38, 25 October 2017

OCA: New page: '''Unreleased structure''' The entry 5yku is ON HOLD Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J. Description: The crystal structure of Macrob...

OCA — Wed, 25 Oct 2017 05:38:51 GMT

New page: '''Unreleased structure''' The entry 5yku is ON HOLD Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J. Description: The crystal structure of Macrob...

New page

'''Unreleased structure'''

The entry 5yku is ON HOLD

Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.

Description: The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Zn ions
[[Category: Unreleased Structures]]
[[Category: Yoshimura, M]]
[[Category: Chen, N.C]]
[[Category: Guan, H.H]]
[[Category: Lin, C.C]]
[[Category: Chen, C.J]]
[[Category: Chuankhayan, P]]