5yol - Revision history

OCA at 08:34, 22 November 2023

OCA — Wed, 22 Nov 2023 08:34:32 GMT

←Older revision		Revision as of 08:34, 22 November 2023
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	<StructureSection load='5yol' size='340' side='right'caption='[[5yol]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='5yol' size='340' side='right'caption='[[5yol]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yol]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5YOL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yol]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YOL FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5yol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yol OCA], [~~http~~://pdbe.org/5yol PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yol RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yol PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yol ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yol OCA], [https://pdbe.org/5yol PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yol RCSB], [https://www.ebi.ac.uk/pdbsum/5yol PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yol ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]	+	[https://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]

	==See Also==		==See Also==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Acinetobacter baumannii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Nucleoside-diphosphate kinase]]~~	+	[[Category: Kaur P]]
-	[[Category: Kaur, P]]	+	[[Category: Sharma S]]
-	[[Category: Sharma, S]]	+	[[Category: Sikarwar J]]
-	[[Category: Sikarwar, J]]	+	[[Category: Singh PK]]
-	[[Category: Singh~~, P K~~]]	+	[[Category: Singh TP]]
-	[[Category: Singh~~, T P]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 09:23, 21 October 2020

OCA — Wed, 21 Oct 2020 09:23:57 GMT

←Older revision		Revision as of 09:23, 21 October 2020
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	==Crystal structure of octameric form of Nucleoside diphosphate kinase from Acinetobacter baumannii at 2.2 A resolution==		==Crystal structure of octameric form of Nucleoside diphosphate kinase from Acinetobacter baumannii at 2.2 A resolution==
-	<StructureSection load='5yol' size='340' side='right' caption='[[5yol]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='5yol' size='340' side='right'caption='[[5yol]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yol]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOL OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YOL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yol]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YOL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yol OCA], [http://pdbe.org/5yol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yol RCSB], [http://www.ebi.ac.uk/pdbsum/5yol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yol ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5yol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yol OCA], [http://pdbe.org/5yol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yol RCSB], [http://www.ebi.ac.uk/pdbsum/5yol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yol ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]		[[http://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
		+
		+	==See Also==
		+	*[[Nucleoside diphosphate kinase 3D structures\|Nucleoside diphosphate kinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Nucleoside-diphosphate kinase]]		[[Category: Nucleoside-diphosphate kinase]]
	[[Category: Kaur, P]]		[[Category: Kaur, P]]

OCA: Protected "5yol" [edit=sysop:move=sysop]

OCA — Wed, 08 Nov 2017 07:54:35 GMT

Protected "5yol" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:54, 8 November 2017

OCA: New page: ==Crystal structure of octameric form of Nucleoside diphosphate kinase from Acinetobacter baumannii at 2.2 A resolution== == Structural highlights ==
<table><tr><td colspan='2'>[[5yol]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOL OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YOL FirstGlance]. 
</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </td></tr>
<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yol OCA], [http://pdbe.org/5yol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yol RCSB], [http://www.ebi.ac.uk/pdbsum/5yol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yol ProSAT]</td></tr>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
TOC
</StructureSection>
[[Category: Nucleoside-diphosphate kinase]]
[[Category: Kaur, P]]
[[Category: Sharma, S]]
[[Category: Sikarwar, J]]
[[Category: Singh, P K]]
[[Category: Singh, T P]]
[[Category: Transferase]]