5yqg - Revision history

OCA at 08:35, 22 November 2023

OCA — Wed, 22 Nov 2023 08:35:25 GMT

←Older revision		Revision as of 08:35, 22 November 2023
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	==The structure of 14-3-3 and pNumb peptide==		==The structure of 14-3-3 and pNumb peptide==
-	<StructureSection load='5yqg' size='340' side='right' caption='[[5yqg]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='5yqg' size='340' side='right'caption='[[5yqg]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yqg]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lk3_transgenic_mice Lk3 transgenic mice~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YQG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yqg]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YQG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YQG FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=SEP:PHOSPHOSERINE'>SEP</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~Ywhah ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=10090 LK3 transgenic mice]), Numb ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yqg OCA], [~~http~~://pdbe.org/5yqg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yqg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yqg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yqg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yqg OCA], [https://pdbe.org/5yqg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yqg RCSB], [https://www.ebi.ac.uk/pdbsum/5yqg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yqg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/1433F_MOUSE 1433F_MOUSE]] Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. Negatively regulates the kinase activity of PDPK1 (By similarity). [[http://www.uniprot.org/uniprot/NUMB_MOUSE NUMB_MOUSE]] Plays a role in the process of neurogenesis. Required throughout embryonic neurogenesis to maintain neural progenitor cells, also called radial glial cells (RGCs), by allowing their daughter cells to choose progenitor over neuronal cell fate. Not required for the proliferation of neural progenitor cells before the onset of neurogenesis. Also involved postnatally in the subventricular zone (SVZ) neurogenesis by regulating SVZ neuroblasts survival and ependymal wall integrity. May also mediate local repair of brain ventricular wall damage.<ref>PMID:10841580</ref> <ref>PMID:12410312</ref> <ref>PMID:15273690</ref> <ref>PMID:17174898</ref>	+	[https://www.uniprot.org/uniprot/1433F_MOUSE 1433F_MOUSE] Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. Negatively regulates the kinase activity of PDPK1 (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5yqg" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5yqg" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[14-3-3 protein 3D structures\|14-3-3 protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Lk3 transgenic mice~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Chen, X~~]]	+	[[Category: Mus musculus]]
-	[[Category: ~~Liu, Z~~]]	+	[[Category: Chen X]]
-	[[Category: ~~Wen, W~~]]	+	[[Category: Liu Z]]
-	[[Category: ~~Complex]]~~	+	[[Category: Wen W]]
-	~~[[Category: Non-canonical]]~~	+
-	~~[[Category: Peptide binding protein]]~~	+
-	~~[[Category: Phosphorylation~~]]	+

OCA at 08:27, 2 May 2018

OCA — Wed, 02 May 2018 08:27:55 GMT

←Older revision		Revision as of 08:27, 2 May 2018
Line 3:		Line 3:
	<StructureSection load='5yqg' size='340' side='right' caption='[[5yqg]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='5yqg' size='340' side='right' caption='[[5yqg]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yqg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yqg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YQG FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Ywhah ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]), Numb ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yqg OCA], [http://pdbe.org/5yqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yqg RCSB], [http://www.ebi.ac.uk/pdbsum/5yqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yqg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yqg OCA], [http://pdbe.org/5yqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yqg RCSB], [http://www.ebi.ac.uk/pdbsum/5yqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yqg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/1433F_MOUSE 1433F_MOUSE]] Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. Negatively regulates the kinase activity of PDPK1 (By similarity). [[http://www.uniprot.org/uniprot/NUMB_MOUSE NUMB_MOUSE]] Plays a role in the process of neurogenesis. Required throughout embryonic neurogenesis to maintain neural progenitor cells, also called radial glial cells (RGCs), by allowing their daughter cells to choose progenitor over neuronal cell fate. Not required for the proliferation of neural progenitor cells before the onset of neurogenesis. Also involved postnatally in the subventricular zone (SVZ) neurogenesis by regulating SVZ neuroblasts survival and ependymal wall integrity. May also mediate local repair of brain ventricular wall damage.<ref>PMID:10841580</ref> <ref>PMID:12410312</ref> <ref>PMID:15273690</ref> <ref>PMID:17174898</ref>		[[http://www.uniprot.org/uniprot/1433F_MOUSE 1433F_MOUSE]] Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. Negatively regulates the kinase activity of PDPK1 (By similarity). [[http://www.uniprot.org/uniprot/NUMB_MOUSE NUMB_MOUSE]] Plays a role in the process of neurogenesis. Required throughout embryonic neurogenesis to maintain neural progenitor cells, also called radial glial cells (RGCs), by allowing their daughter cells to choose progenitor over neuronal cell fate. Not required for the proliferation of neural progenitor cells before the onset of neurogenesis. Also involved postnatally in the subventricular zone (SVZ) neurogenesis by regulating SVZ neuroblasts survival and ependymal wall integrity. May also mediate local repair of brain ventricular wall damage.<ref>PMID:10841580</ref> <ref>PMID:12410312</ref> <ref>PMID:15273690</ref> <ref>PMID:17174898</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Traffic of cargo across membranes helps establish, maintain, and reorganize distinct cellular compartments and is fundamental to many metabolic processes. The cargo-selective endocytic adaptor Numb participates in clathrin-dependent endocytosis by attaching cargoes to the clathrin adaptor alpha-adaptin. The phosphorylation of Numb at Ser(265) and Ser(284) recruits the regulatory protein 14-3-3, accompanied by the dissociation of Numb from alpha-adaptin and Numb's translocation from the cortical membrane to the cytosol. However, the molecular mechanisms underlying the Numb-alpha-adaptin interaction and its regulation by Numb phosphorylation and 14-3-3 recruitment remain poorly understood. Here, biochemical and structural analyses of the Numb.14-3-3 complex revealed that Numb phosphorylation at both Ser(265) and Ser(284) is required for Numb's efficient interaction with 14-3-3. We also discovered that an RQFRF motif surrounding Ser(265) in Numb functions together with the canonical C-terminal DPF motif, required for Numb's interaction with alpha-adaptin, to form a stable complex with alpha-adaptin. Of note, we provide evidence that the phosphorylation-induced binding of 14-3-3 to Numb directly competes with the binding of alpha-adaptin to Numb. Our findings suggest a potential mechanism governing the dynamic assembly of Numb with alpha-adaptin or 14-3-3. This dual-site recognition of Numb by alpha-adaptin may have implications for other alpha-adaptin targets. We propose that the newly identified alpha-adaptin-binding site surrounding Ser(265) in Numb functions as a triggering mechanism for the dynamic dissociation of the Numb.alpha-adaptin complex.
		+
		+	Structural determinants controlling 14-3-3 recruitment to the endocytic adaptor Numb and dissociation of the Numb.alpha-adaptin complex.,Chen X, Liu Z, Shan Z, Yao W, Gu A, Wen W J Biol Chem. 2018 Mar 16;293(11):4149-4158. doi: 10.1074/jbc.RA117.000897. Epub, 2018 Jan 30. PMID:29382713<ref>PMID:29382713</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5yqg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lk3 transgenic mice]]
	[[Category: Chen, X]]		[[Category: Chen, X]]
	[[Category: Liu, Z]]		[[Category: Liu, Z]]

OCA at 06:18, 7 February 2018

OCA — Wed, 07 Feb 2018 06:18:42 GMT

←Older revision		Revision as of 06:18, 7 February 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	The ~~entry~~ 5yqg is ~~ON HOLD~~ ~~until Paper Publication~~	+	==The structure of 14-3-3 and pNumb peptide==
-		+	<StructureSection load='5yqg' size='340' side='right' caption='[[5yqg]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5yqg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YQG FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yqg OCA], [http://pdbe.org/5yqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yqg RCSB], [http://www.ebi.ac.uk/pdbsum/5yqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yqg ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/1433F_MOUSE 1433F_MOUSE]] Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. Negatively regulates the kinase activity of PDPK1 (By similarity). [[http://www.uniprot.org/uniprot/NUMB_MOUSE NUMB_MOUSE]] Plays a role in the process of neurogenesis. Required throughout embryonic neurogenesis to maintain neural progenitor cells, also called radial glial cells (RGCs), by allowing their daughter cells to choose progenitor over neuronal cell fate. Not required for the proliferation of neural progenitor cells before the onset of neurogenesis. Also involved postnatally in the subventricular zone (SVZ) neurogenesis by regulating SVZ neuroblasts survival and ependymal wall integrity. May also mediate local repair of brain ventricular wall damage.<ref>PMID:10841580</ref> <ref>PMID:12410312</ref> <ref>PMID:15273690</ref> <ref>PMID:17174898</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chen, X]]
		+	[[Category: Liu, Z]]
		+	[[Category: Wen, W]]
		+	[[Category: Complex]]
		+	[[Category: Non-canonical]]
		+	[[Category: Peptide binding protein]]
		+	[[Category: Phosphorylation]]

OCA at 05:46, 13 December 2017

OCA — Wed, 13 Dec 2017 05:46:01 GMT

←Older revision		Revision as of 05:46, 13 December 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yqg is ON HOLD	+	The entry 5yqg is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5yqg" [edit=sysop:move=sysop]

OCA — Wed, 15 Nov 2017 06:16:02 GMT

Protected "5yqg" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:16, 15 November 2017

OCA: New page: '''Unreleased structure''' The entry 5yqg is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 15 Nov 2017 06:16:01 GMT

New page: '''Unreleased structure''' The entry 5yqg is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5yqg is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]