5yra - Revision history

OCA at 10:24, 27 March 2024

OCA — Wed, 27 Mar 2024 10:24:50 GMT

←Older revision		Revision as of 10:24, 27 March 2024
Line 3:		Line 3:
	<StructureSection load='5yra' size='340' side='right'caption='[[5yra]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='5yra' size='340' side='right'caption='[[5yra]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yra]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bmcpv Bmcpv~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YRA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5YRA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yra]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YRA FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.79Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5yra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yra OCA], [~~http~~://pdbe.org/5yra PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yra RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yra PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yra ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yra OCA], [https://pdbe.org/5yra PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yra RCSB], [https://www.ebi.ac.uk/pdbsum/5yra PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yra ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/PYHD_CPVBM PYHD_CPVBM]] Major component of the virus occlusion bodies, which are large proteinaceous structures (polyhedra), that protect the virus from the outside environment for extended periods until they are ingested by insect larvae.	+	[https://www.uniprot.org/uniprot/PYHD_CPVBM PYHD_CPVBM] Major component of the virus occlusion bodies, which are large proteinaceous structures (polyhedra), that protect the virus from the outside environment for extended periods until they are ingested by insect larvae.
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Protein crystals are formed via ordered arrangements of proteins, which assemble to form supramolecular structures. Here, we show a method for the assembly of supramolecular protein cages within a crystalline environment. The cages are stabilized by covalent cross-linking allowing their release via dissolution of the crystal. The high stability of the desiccated protein crystals allows cages to be constructed.	+

-	Supramolecular protein cages constructed from a crystalline protein matrix.,Negishi H, Abe S, Yamashita K, Hirata K, Niwase K, Boudes M, Coulibaly F, Mori H, Ueno T Chem Commun (Camb). 2018 Feb 20;54(16):1988-1991. doi: 10.1039/c7cc08689j. PMID:29405208<ref>PMID:29405208</ref>	+	==See Also==
-		+	*[[Polyhedrin\|Polyhedrin]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 5yra" style="background-color:#fffaf0;"></div>~~	+
-	== ~~References~~ ==	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bmcpv~~]]	+	[[Category: Bombyx mori cypovirus 1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abe, S]]	+	[[Category: Abe S]]
-	[[Category: Boudes, M]]	+	[[Category: Boudes M]]
-	[[Category: Coulibaly, F]]	+	[[Category: Coulibaly F]]
-	[[Category: Hirata, K]]	+	[[Category: Hirata K]]
-	[[Category: Mori, H]]	+	[[Category: Mori H]]
-	[[Category: Negishi, H]]	+	[[Category: Negishi H]]
-	[[Category: Niwase, K]]	+	[[Category: Niwase K]]
-	[[Category: Ueno, T]]	+	[[Category: Ueno T]]
-	[[Category: Yamashita, K]]	+	[[Category: Yamashita K]]
-	~~[[Category: In vivo protein crystal]]~~	+
-	~~[[Category: Polyhedra]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 09:25, 21 October 2020

OCA — Wed, 21 Oct 2020 09:25:53 GMT

←Older revision		Revision as of 09:25, 21 October 2020
Line 1:		Line 1:

	==Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant==		==Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant==
-	<StructureSection load='5yra' size='340' side='right' caption='[[5yra]], [[Resolution\|resolution]] 1.79Å' scene=''>	+	<StructureSection load='5yra' size='340' side='right'caption='[[5yra]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yra]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bmcpv Bmcpv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YRA OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YRA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yra]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bmcpv Bmcpv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YRA OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YRA FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yra OCA], [http://pdbe.org/5yra PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yra RCSB], [http://www.ebi.ac.uk/pdbsum/5yra PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yra ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5yra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yra OCA], [http://pdbe.org/5yra PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yra RCSB], [http://www.ebi.ac.uk/pdbsum/5yra PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yra ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Bmcpv]]		[[Category: Bmcpv]]
		+	[[Category: Large Structures]]
	[[Category: Abe, S]]		[[Category: Abe, S]]
	[[Category: Boudes, M]]		[[Category: Boudes, M]]

OCA at 06:19, 8 March 2018

OCA — Thu, 08 Mar 2018 06:19:10 GMT

←Older revision		Revision as of 06:19, 8 March 2018
Line 3:		Line 3:
	<StructureSection load='5yra' size='340' side='right' caption='[[5yra]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='5yra' size='340' side='right' caption='[[5yra]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yra]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YRA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yra]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bmcpv Bmcpv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YRA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yra OCA], [http://pdbe.org/5yra PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yra RCSB], [http://www.ebi.ac.uk/pdbsum/5yra PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yra ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yra OCA], [http://pdbe.org/5yra PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yra RCSB], [http://www.ebi.ac.uk/pdbsum/5yra PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yra ProSAT]</span></td></tr>
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bmcpv]]
	[[Category: Abe, S]]		[[Category: Abe, S]]
	[[Category: Boudes, M]]		[[Category: Boudes, M]]

OCA at 07:23, 22 February 2018

OCA — Thu, 22 Feb 2018 07:23:09 GMT

←Older revision		Revision as of 07:23, 22 February 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5yra is ~~ON HOLD~~ until ~~Paper~~ Publication	+	==Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant==
		+	<StructureSection load='5yra' size='340' side='right' caption='[[5yra]], [[Resolution\|resolution]] 1.79Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5yra]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YRA FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yra OCA], [http://pdbe.org/5yra PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yra RCSB], [http://www.ebi.ac.uk/pdbsum/5yra PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yra ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PYHD_CPVBM PYHD_CPVBM]] Major component of the virus occlusion bodies, which are large proteinaceous structures (polyhedra), that protect the virus from the outside environment for extended periods until they are ingested by insect larvae.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein crystals are formed via ordered arrangements of proteins, which assemble to form supramolecular structures. Here, we show a method for the assembly of supramolecular protein cages within a crystalline environment. The cages are stabilized by covalent cross-linking allowing their release via dissolution of the crystal. The high stability of the desiccated protein crystals allows cages to be constructed.

-	~~Authors:~~ Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.	+	Supramolecular protein cages constructed from a crystalline protein matrix.,Negishi H, Abe S, Yamashita K, Hirata K, Niwase K, Boudes M, Coulibaly F, Mori H, Ueno T Chem Commun (Camb). 2018 Feb 20;54(16):1988-1991. doi: 10.1039/c7cc08689j. PMID:29405208<ref>PMID:29405208</ref>

-	~~Description: Crystal Structure~~ of ~~Cypovirus Polyhedra R13A~~/~~S193C/A194C Mutant~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	~~[[Category: Mori, H]]~~	+	<div class="pdbe-citations 5yra" style="background-color:#fffaf0;"></div>
-	~~[[Category: Yamashita, K]]~~	+	== References ==
-	~~[[Category: Boudes, M]]~~	+	<references/>
-	~~[[Category: Niwase, K]]~~	+	__TOC__
-	~~[[Category: Negishi, H]]~~	+	</StructureSection>
	[[Category: Abe, S]]		[[Category: Abe, S]]
		+	[[Category: Boudes, M]]
	[[Category: Coulibaly, F]]		[[Category: Coulibaly, F]]
	[[Category: Hirata, K]]		[[Category: Hirata, K]]
		+	[[Category: Mori, H]]
		+	[[Category: Negishi, H]]
		+	[[Category: Niwase, K]]
	[[Category: Ueno, T]]		[[Category: Ueno, T]]
		+	[[Category: Yamashita, K]]
		+	[[Category: In vivo protein crystal]]
		+	[[Category: Polyhedra]]
		+	[[Category: Viral protein]]

OCA at 04:55, 29 November 2017

OCA — Wed, 29 Nov 2017 04:55:47 GMT

←Older revision		Revision as of 04:55, 29 November 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yra is ON HOLD	+	The entry 5yra is ON HOLD until Paper Publication

	Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.		Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.

OCA: Protected "5yra" [edit=sysop:move=sysop]

OCA — Wed, 15 Nov 2017 06:17:38 GMT

Protected "5yra" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:17, 15 November 2017

OCA: New page: '''Unreleased structure''' The entry 5yra is ON HOLD Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T. Description: Cr...

OCA — Wed, 15 Nov 2017 06:17:36 GMT

New page: '''Unreleased structure''' The entry 5yra is ON HOLD Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T. Description: Cr...

New page

'''Unreleased structure'''

The entry 5yra is ON HOLD

Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.

Description: Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant
[[Category: Unreleased Structures]]
[[Category: Mori, H]]
[[Category: Yamashita, K]]
[[Category: Boudes, M]]
[[Category: Niwase, K]]
[[Category: Negishi, H]]
[[Category: Abe, S]]
[[Category: Coulibaly, F]]
[[Category: Hirata, K]]
[[Category: Ueno, T]]