5yt4 - Revision history

OCA at 10:25, 27 March 2024

OCA — Wed, 27 Mar 2024 10:25:01 GMT

←Older revision		Revision as of 10:25, 27 March 2024
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	==Galectin-10 variant H53A soaked in glycerol for 5 minutes==		==Galectin-10 variant H53A soaked in glycerol for 5 minutes==
-	<StructureSection load='5yt4' size='340' side='right' caption='[[5yt4]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='5yt4' size='340' side='right'caption='[[5yt4]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yt4]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YT4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YT4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yt4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YT4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YT4 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~CLC, LGALS10, LGALS10A ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yt4 OCA], [~~http~~://pdbe.org/5yt4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yt4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yt4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yt4 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yt4 OCA], [https://pdbe.org/5yt4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yt4 RCSB], [https://www.ebi.ac.uk/pdbsum/5yt4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yt4 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LEG10_HUMAN LEG10_HUMAN]] Regulates immune responses through the recognition of cell-surface glycans. Essential for the anergy and suppressive function of CD25-positive regulatory T-cells (Treg).<ref>PMID:17502455</ref>	+	[https://www.uniprot.org/uniprot/LEG10_HUMAN LEG10_HUMAN] Regulates immune responses through the recognition of cell-surface glycans. Essential for the anergy and suppressive function of CD25-positive regulatory T-cells (Treg).<ref>PMID:17502455</ref>
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Galectin-10 (Gal-10) which forms Charcot-Leyden crystals in vivo, is crucial to regulating lymph cell function. Here, we solved the crystal structures of Gal-10 and eight variants at resolutions of 1.55-2.00 A. Structural analysis and size exclusion chromatography demonstrated that Gal-10 dimerizes with a novel global shape that is different from that of other prototype galectins (e.g., Gal-1, -2 and -7). In the Gal-10 dimer, Glu33 from one subunit modifies the carbohydrate binding site of another, essentially inhibiting disaccharide binding. Nevertheless, glycerol (and possibly other small hydroxylated molecules) can interact with residues at the ligand binding site, with His53 being the most crucial for binding. Alanine substitution of the conserved Trp residue (Trp72) that is crucial to saccharide binding in other galectins, actually leads to enhanced erythrocyte agglutination, suggesting that Trp72 negatively regulates Gal-10 ligand binding. Overall, our crystallographic and biochemical results provide insight into Gal-10 ligand binding specificity.	+

-	Galectin-10: a new structural type of prototype galectin dimer and effects on saccharide ligand binding.,Su J, Gao J, Si Y, Cui L, Song C, Wang Y, Wu R, Tai G, Zhou Y Glycobiology. 2017 Dec 23. pii: 4773962. doi: 10.1093/glycob/cwx107. PMID:29293962<ref>PMID:29293962</ref>	+	==See Also==
-		+	*[[Galectin 3D structures\|Galectin 3D structures]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class~~=~~"pdbe-citations 5yt4" style~~=~~"background-color:#fffaf0;"></div>~~	+
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Su, J~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Cell adhesion]]~~	+	[[Category: Su J]]
-	~~[[Category: Galectin-10~~]]	+

OCA at 06:19, 8 March 2018

OCA — Thu, 08 Mar 2018 06:19:25 GMT

←Older revision		Revision as of 06:19, 8 March 2018
Line 3:		Line 3:
	<StructureSection load='5yt4' size='340' side='right' caption='[[5yt4]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='5yt4' size='340' side='right' caption='[[5yt4]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yt4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YT4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YT4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yt4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YT4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YT4 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CLC, LGALS10, LGALS10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yt4 OCA], [http://pdbe.org/5yt4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yt4 RCSB], [http://www.ebi.ac.uk/pdbsum/5yt4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yt4 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yt4 OCA], [http://pdbe.org/5yt4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yt4 RCSB], [http://www.ebi.ac.uk/pdbsum/5yt4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yt4 ProSAT]</span></td></tr>
	</table>		</table>
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Su, J]]		[[Category: Su, J]]
	[[Category: Cell adhesion]]		[[Category: Cell adhesion]]
	[[Category: Galectin-10]]		[[Category: Galectin-10]]

OCA at 18:28, 24 January 2018

OCA — Wed, 24 Jan 2018 18:28:46 GMT

←Older revision		Revision as of 18:28, 24 January 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5yt4 is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Galectin-10 variant H53A soaked in glycerol for 5 minutes==
		+	<StructureSection load='5yt4' size='340' side='right' caption='[[5yt4]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5yt4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YT4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YT4 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yt4 OCA], [http://pdbe.org/5yt4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yt4 RCSB], [http://www.ebi.ac.uk/pdbsum/5yt4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yt4 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LEG10_HUMAN LEG10_HUMAN]] Regulates immune responses through the recognition of cell-surface glycans. Essential for the anergy and suppressive function of CD25-positive regulatory T-cells (Treg).<ref>PMID:17502455</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Galectin-10 (Gal-10) which forms Charcot-Leyden crystals in vivo, is crucial to regulating lymph cell function. Here, we solved the crystal structures of Gal-10 and eight variants at resolutions of 1.55-2.00 A. Structural analysis and size exclusion chromatography demonstrated that Gal-10 dimerizes with a novel global shape that is different from that of other prototype galectins (e.g., Gal-1, -2 and -7). In the Gal-10 dimer, Glu33 from one subunit modifies the carbohydrate binding site of another, essentially inhibiting disaccharide binding. Nevertheless, glycerol (and possibly other small hydroxylated molecules) can interact with residues at the ligand binding site, with His53 being the most crucial for binding. Alanine substitution of the conserved Trp residue (Trp72) that is crucial to saccharide binding in other galectins, actually leads to enhanced erythrocyte agglutination, suggesting that Trp72 negatively regulates Gal-10 ligand binding. Overall, our crystallographic and biochemical results provide insight into Gal-10 ligand binding specificity.

-	~~Authors~~: Su, J.	+	Galectin-10: a new structural type of prototype galectin dimer and effects on saccharide ligand binding.,Su J, Gao J, Si Y, Cui L, Song C, Wang Y, Wu R, Tai G, Zhou Y Glycobiology. 2017 Dec 23. pii: 4773962. doi: 10.1093/glycob/cwx107. PMID:29293962<ref>PMID:29293962</ref>

-	~~Description: Galectin-10 variant H53A soaked in glycerol for 5 minutes~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5yt4" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Su, J]]		[[Category: Su, J]]
		+	[[Category: Cell adhesion]]
		+	[[Category: Galectin-10]]

OCA at 05:30, 17 January 2018

OCA — Wed, 17 Jan 2018 05:30:09 GMT

←Older revision		Revision as of 05:30, 17 January 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yt4 is ON HOLD	+	The entry 5yt4 is ON HOLD until Paper Publication

	Authors: Su, J.		Authors: Su, J.

-	Description: Galectin-10 variant H53A soaked in glycerol for 10 minutes	+	Description: Galectin-10 variant H53A soaked in glycerol for 5 minutes
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Su, J]]		[[Category: Su, J]]

OCA at 04:57, 29 November 2017

OCA — Wed, 29 Nov 2017 04:57:00 GMT

←Older revision		Revision as of 04:57, 29 November 2017
Line 3:		Line 3:
	The entry 5yt4 is ON HOLD		The entry 5yt4 is ON HOLD

-	Authors: ~~Su, J.,~~ Su, J.	+	Authors: Su, J.

	Description: Galectin-10 variant H53A soaked in glycerol for 10 minutes		Description: Galectin-10 variant H53A soaked in glycerol for 10 minutes
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Su, J]]		[[Category: Su, J]]

OCA: Protected "5yt4" [edit=sysop:move=sysop]

OCA — Wed, 22 Nov 2017 06:29:13 GMT

Protected "5yt4" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:29, 22 November 2017

OCA: New page: '''Unreleased structure''' The entry 5yt4 is ON HOLD Authors: Su, J., Su, J. Description: Galectin-10 variant H53A soaked in glycerol for 10 minutes Category: Unreleased Structures...

OCA — Wed, 22 Nov 2017 06:29:11 GMT

New page: '''Unreleased structure''' The entry 5yt4 is ON HOLD Authors: Su, J., Su, J. Description: Galectin-10 variant H53A soaked in glycerol for 10 minutes Category: Unreleased Structures...

New page

'''Unreleased structure'''

The entry 5yt4 is ON HOLD

Authors: Su, J., Su, J.

Description: Galectin-10 variant H53A soaked in glycerol for 10 minutes
[[Category: Unreleased Structures]]
[[Category: Su, J]]