5yxm - Revision history

OCA at 08:39, 22 November 2023

OCA — Wed, 22 Nov 2023 08:39:56 GMT

←Older revision		Revision as of 08:39, 22 November 2023
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	==Crystal structure of Chlamydomonas Outer Arm Dynein Light Chain 1==		==Crystal structure of Chlamydomonas Outer Arm Dynein Light Chain 1==
-	<StructureSection load='5yxm' size='340' side='right' caption='[[5yxm]], [[Resolution\|resolution]] 1.54Å' scene=''>	+	<StructureSection load='5yxm' size='340' side='right'caption='[[5yxm]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yxm]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Chlre Chlre~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YXM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YXM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yxm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YXM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.545Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~LC1, CHLREDRAFT_186669 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=3055 CHLRE])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yxm OCA], [~~http~~://pdbe.org/5yxm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yxm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yxm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yxm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yxm OCA], [https://pdbe.org/5yxm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yxm RCSB], [https://www.ebi.ac.uk/pdbsum/5yxm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yxm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/DNAL1_CHLRE DNAL1_CHLRE]] Associates with the gamma heavy chain in the outer arm dynein. May target p45 polypeptide (an 45 kDa axonemal component) to the motor domain of the gamma heavy chain dynein.<ref>PMID:10353837</ref>	+	[https://www.uniprot.org/uniprot/DNAL1_CHLRE DNAL1_CHLRE] Associates with the gamma heavy chain in the outer arm dynein. May target p45 polypeptide (an 45 kDa axonemal component) to the motor domain of the gamma heavy chain dynein.<ref>PMID:10353837</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5yxm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5yxm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Dynein 3D structures\|Dynein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chlre~~]]	+	[[Category: Chlamydomonas reinhardtii]]
-	[[Category: Kurisu, G]]	+	[[Category: Large Structures]]
-	[[Category: Nishikawa, Y]]	+	[[Category: Kurisu G]]
-	[[Category: Tanaka, H]]	+	[[Category: Nishikawa Y]]
-	[[Category: Toda, A]]	+	[[Category: Tanaka H]]
-	[[Category: Yagi, T]]	+	[[Category: Toda A]]
-	~~[[Category: Contractile protein]]~~	+	[[Category: Yagi T]]
-	~~[[Category: Motor protein~~]]	+

OCA at 05:56, 25 April 2018

OCA — Wed, 25 Apr 2018 05:56:20 GMT

←Older revision		Revision as of 05:56, 25 April 2018
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	<StructureSection load='5yxm' size='340' side='right' caption='[[5yxm]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='5yxm' size='340' side='right' caption='[[5yxm]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yxm]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YXM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yxm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlre Chlre]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YXM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LC1, CHLREDRAFT_186669 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3055 CHLRE])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yxm OCA], [http://pdbe.org/5yxm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yxm RCSB], [http://www.ebi.ac.uk/pdbsum/5yxm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yxm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yxm OCA], [http://pdbe.org/5yxm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yxm RCSB], [http://www.ebi.ac.uk/pdbsum/5yxm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yxm ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Chlre]]
	[[Category: Kurisu, G]]		[[Category: Kurisu, G]]
	[[Category: Nishikawa, Y]]		[[Category: Nishikawa, Y]]

OCA at 06:28, 14 March 2018

OCA — Wed, 14 Mar 2018 06:28:10 GMT

←Older revision		Revision as of 06:28, 14 March 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5yxm is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Crystal structure of Chlamydomonas Outer Arm Dynein Light Chain 1==
		+	<StructureSection load='5yxm' size='340' side='right' caption='[[5yxm]], [[Resolution\|resolution]] 1.54Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5yxm]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YXM FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yxm OCA], [http://pdbe.org/5yxm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yxm RCSB], [http://www.ebi.ac.uk/pdbsum/5yxm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yxm ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DNAL1_CHLRE DNAL1_CHLRE]] Associates with the gamma heavy chain in the outer arm dynein. May target p45 polypeptide (an 45 kDa axonemal component) to the motor domain of the gamma heavy chain dynein.<ref>PMID:10353837</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Dynein motors are biologically important bio-nanomachines, and many atomic resolution structures of cytoplasmic dynein components from different organisms have been analyzed by X-ray crystallography, cryo-EM, and NMR spectroscopy. This review provides a historical perspective of structural studies of cytoplasmic and axonemal dynein including accessory proteins. We describe representative structural studies of every component of dynein and summarize them as a structural atlas that classifies the cytoplasmic and axonemal dyneins. Based on our review of all dynein structures in the Protein Data Bank, we raise two important points for understanding the two types of dynein motor and discuss the potential prospects of future structural studies.

-	~~Authors: Toda~~, A., Tanaka, H., ~~Nishikawa, Y~~.~~, Yagi, T~~., ~~Kurisu, G~~.	+	Structural atlas of dynein motors at atomic resolution.,Toda A, Tanaka H, Kurisu G Biophys Rev. 2018 Feb 24. pii: 10.1007/s12551-018-0402-y. doi:, 10.1007/s12551-018-0402-y. PMID:29478092<ref>PMID:29478092</ref>

-	~~Description: Crystal structure~~ of ~~Chlamydomonas Outer Arm Dynein Light Chain 1~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Toda~~, A]]	+	<div class="pdbe-citations 5yxm" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Kurisu, G]]
		+	[[Category: Nishikawa, Y]]
	[[Category: Tanaka, H]]		[[Category: Tanaka, H]]
		+	[[Category: Toda, A]]
	[[Category: Yagi, T]]		[[Category: Yagi, T]]
-	[[Category: ~~Nishikawa, Y~~]]	+	[[Category: Contractile protein]]
-	[[Category: ~~Kurisu, G~~]]	+	[[Category: Motor protein]]

OCA at 07:03, 10 January 2018

OCA — Wed, 10 Jan 2018 07:03:22 GMT

←Older revision		Revision as of 07:03, 10 January 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yxm is ON HOLD	+	The entry 5yxm is ON HOLD until Paper Publication

	Authors: Toda, A., Tanaka, H., Nishikawa, Y., Yagi, T., Kurisu, G.		Authors: Toda, A., Tanaka, H., Nishikawa, Y., Yagi, T., Kurisu, G.
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	Description: Crystal structure of Chlamydomonas Outer Arm Dynein Light Chain 1		Description: Crystal structure of Chlamydomonas Outer Arm Dynein Light Chain 1
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Toda, A]]
	[[Category: Tanaka, H]]		[[Category: Tanaka, H]]
	[[Category: Yagi, T]]		[[Category: Yagi, T]]
	[[Category: Nishikawa, Y]]		[[Category: Nishikawa, Y]]
	[[Category: Kurisu, G]]		[[Category: Kurisu, G]]
-	[[Category: Toda, A]]

OCA: Protected "5yxm" [edit=sysop:move=sysop]

OCA — Wed, 13 Dec 2017 05:48:17 GMT

Protected "5yxm" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:48, 13 December 2017

OCA: New page: '''Unreleased structure''' The entry 5yxm is ON HOLD Authors: Toda, A., Tanaka, H., Nishikawa, Y., Yagi, T., Kurisu, G. Description: Crystal structure of Chlamydomonas Outer Arm Dynein...

OCA — Wed, 13 Dec 2017 05:48:16 GMT

New page: '''Unreleased structure''' The entry 5yxm is ON HOLD Authors: Toda, A., Tanaka, H., Nishikawa, Y., Yagi, T., Kurisu, G. Description: Crystal structure of Chlamydomonas Outer Arm Dynein...

New page

'''Unreleased structure'''

The entry 5yxm is ON HOLD

Authors: Toda, A., Tanaka, H., Nishikawa, Y., Yagi, T., Kurisu, G.

Description: Crystal structure of Chlamydomonas Outer Arm Dynein Light Chain 1
[[Category: Unreleased Structures]]
[[Category: Tanaka, H]]
[[Category: Yagi, T]]
[[Category: Nishikawa, Y]]
[[Category: Kurisu, G]]
[[Category: Toda, A]]