5z0q - Revision history

OCA at 08:43, 22 November 2023

OCA — Wed, 22 Nov 2023 08:43:32 GMT

←Older revision		Revision as of 08:43, 22 November 2023
Line 3:		Line 3:
	<StructureSection load='5z0q' size='340' side='right'caption='[[5z0q]], [[Resolution\|resolution]] 2.77Å' scene=''>		<StructureSection load='5z0q' size='340' side='right'caption='[[5z0q]], [[Resolution\|resolution]] 2.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5z0q]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z0Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5Z0Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5z0q]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Erwinia_tasmaniensis_Et1/99 Erwinia tasmaniensis Et1/99]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Z0Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.77Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5z0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z0q OCA], [~~http~~://pdbe.org/5z0q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5z0q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5z0q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5z0q ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5z0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z0q OCA], [https://pdbe.org/5z0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5z0q RCSB], [https://www.ebi.ac.uk/pdbsum/5z0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5z0q ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/B2VJB8_ERWT9 B2VJB8_ERWT9]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Erwinia tasmaniensis Et1/99]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cai~~, Y J~~]]	+	[[Category: Cai YJ]]
-	[[Category: Huang, P]]	+	[[Category: Huang P]]
-	[[Category: Liu~~, P H~~]]	+	[[Category: Liu PH]]
-	[[Category: Wu, L]]	+	[[Category: Wu L]]
-	[[Category: Zhou~~, J H]]~~	+	[[Category: Zhou JH]]
-	~~[[Category: Aminotransferase]]~~	+
-	~~[[Category: Biosynthesis]]~~	+
-	~~[[Category: Biosynthetic protein]]~~	+
-	~~[[Category: C-s lyase]]~~	+
-	~~[[Category: Ovothiol some]]~~	+
-	~~[[Category: Plp coenzyme]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 09:32, 21 October 2020

OCA — Wed, 21 Oct 2020 09:32:44 GMT

←Older revision		Revision as of 09:32, 21 October 2020
Line 1:		Line 1:

	==Crystal Structure of OvoB==		==Crystal Structure of OvoB==
-	<StructureSection load='5z0q' size='340' side='right' caption='[[5z0q]], [[Resolution\|resolution]] 2.77Å' scene=''>	+	<StructureSection load='5z0q' size='340' side='right'caption='[[5z0q]], [[Resolution\|resolution]] 2.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5z0q]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z0Q OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Z0Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5z0q]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z0Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Z0Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5z0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z0q OCA], [http://pdbe.org/5z0q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z0q RCSB], [http://www.ebi.ac.uk/pdbsum/5z0q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z0q ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5z0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z0q OCA], [http://pdbe.org/5z0q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z0q RCSB], [http://www.ebi.ac.uk/pdbsum/5z0q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z0q ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 16:
	</div>		</div>
	<div class="pdbe-citations 5z0q" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5z0q" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Aminotransferase 3D structures\|Aminotransferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Cai, Y J]]		[[Category: Cai, Y J]]
	[[Category: Huang, P]]		[[Category: Huang, P]]

OCA at 12:09, 7 November 2018

OCA — Wed, 07 Nov 2018 12:09:30 GMT

←Older revision		Revision as of 12:09, 7 November 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5z0q is ~~ON HOLD until Paper~~ Publication	+	==Crystal Structure of OvoB==
		+	<StructureSection load='5z0q' size='340' side='right' caption='[[5z0q]], [[Resolution\|resolution]] 2.77Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5z0q]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z0Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z0Q FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z0q OCA], [http://pdbe.org/5z0q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z0q RCSB], [http://www.ebi.ac.uk/pdbsum/5z0q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z0q ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Ovothiols are thiolhistidine derivatives. The first step of ovothiol biosynthesis is OvoA-catalyzed oxidative coupling between histidine and cysteine. In this report, the remaining steps of ovothiol A biosynthesis were reconstituted in vitro. ETA_14770 (OvoB) was reported as a PLP-dependent sulfoxide lyase, responsible for mercaptohistidine production. OvoA was found to be a bifunctional enzyme, which mediates both oxidative C-S bond formation and methylation of mercaptohistidine to afford ovothiol A. Besides reconstituting the whole biosynthetic pathway, two unique features proposed in the literature were also examined: a potential cysteine-recycling mechanism of the C-S lyase (OvoB) and the selectivity of the pi- N methyltransferase.

-	~~Authors~~:	+	In Vitro Reconstitution of the Remaining Steps in Ovothiol A Biosynthesis: C-S Lyase and Methyltransferase Reactions.,Naowarojna N, Huang P, Cai Y, Song H, Wu L, Cheng R, Li Y, Wang S, Lyu H, Zhang L, Zhou J, Liu P Org Lett. 2018 Sep 7;20(17):5427-5430. doi: 10.1021/acs.orglett.8b02332. Epub, 2018 Aug 24. PMID:30141637<ref>PMID:30141637</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5z0q" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Cai, Y J]]
		+	[[Category: Huang, P]]
		+	[[Category: Liu, P H]]
		+	[[Category: Wu, L]]
		+	[[Category: Zhou, J H]]
		+	[[Category: Aminotransferase]]
		+	[[Category: Biosynthesis]]
		+	[[Category: Biosynthetic protein]]
		+	[[Category: C-s lyase]]
		+	[[Category: Ovothiol some]]
		+	[[Category: Plp coenzyme]]
		+	[[Category: Transferase]]

OCA at 06:04, 10 October 2018

OCA — Wed, 10 Oct 2018 06:04:05 GMT

←Older revision		Revision as of 06:04, 10 October 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5z0q is ON HOLD	+	The entry 5z0q is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5z0q" [edit=sysop:move=sysop]

OCA — Wed, 27 Dec 2017 07:14:26 GMT

Protected "5z0q" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:14, 27 December 2017

OCA: New page: '''Unreleased structure''' The entry 5z0q is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 27 Dec 2017 07:14:25 GMT

New page: '''Unreleased structure''' The entry 5z0q is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5z0q is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]