5z4z - Revision history

OCA at 08:45, 22 November 2023

OCA — Wed, 22 Nov 2023 08:45:31 GMT

←Older revision		Revision as of 08:45, 22 November 2023
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	<StructureSection load='5z4z' size='340' side='right'caption='[[5z4z]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='5z4z' size='340' side='right'caption='[[5z4z]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5z4z]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z4Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Z4Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5z4z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Z4Z FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.053Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[5z4x\|5z4x]], [[5z4y\|5z4y]], [[5z50\|5z50]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5z4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z4z OCA], [~~http~~://pdbe.org/5z4z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5z4z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5z4z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5z4z ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5z4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z4z OCA], [https://pdbe.org/5z4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5z4z RCSB], [https://www.ebi.ac.uk/pdbsum/5z4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5z4z ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5z4z" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5z4z" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Transcriptional activator 3D structures\|Transcriptional activator 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Gan, J~~]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: ~~Liang, H~~]]	+	[[Category: Gan J]]
-	[[Category: ~~Yang, C~~]]	+	[[Category: Liang H]]
-	[[Category: ~~Cysb]]~~	+	[[Category: Yang C]]
-	~~[[Category: Dna binding protein~~]]	+

OCA at 17:15, 14 August 2019

OCA — Wed, 14 Aug 2019 17:15:00 GMT

←Older revision		Revision as of 17:15, 14 August 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 5z4z is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of PaCysB NTD domain with space group C2==
		+	<StructureSection load='5z4z' size='340' side='right'caption='[[5z4z]], [[Resolution\|resolution]] 2.05Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5z4z]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z4Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z4Z FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5z4x\|5z4x]], [[5z4y\|5z4y]], [[5z50\|5z50]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z4z OCA], [http://pdbe.org/5z4z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z4z RCSB], [http://www.ebi.ac.uk/pdbsum/5z4z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z4z ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Pseudomonas aeruginosa is a major pathogen that causes serious acute and chronic infections in humans. The type III secretion system (T3SS) is an important virulence factor that plays essential roles in acute infections. However, the regulatory mechanisms of T3SS are not fully understood. In this study, we found that the deletion of cysB reduced the T3SS gene expression and swarming motility but enhanced biofilm formation. In a mouse acute pneumonia model, mutation of cysB decreased the average bacterial load compared to that of the wild-type strain. Further experiments demonstrated that CysB contributed to the reduced T3SS gene expression and bacterial pathogenesis by directly regulating the sensor kinase RetS. We also performed crystallographic studies of PaCysB. The overall fold of PaCysB NTD domain is similar to other LysR superfamily proteins and structural superposition revealed one possible DNA-binding model for PaCysB. Structural comparison also revealed great flexibility of the PaCysB RD domain, which may play an important role in bending and transcriptional regulation of target DNA. Taken together, these results expand our current understanding of the complex regulatory networks of T3SS and RetS pathways. The crystal structure of CysB provides new insights for studying the function of its homologs in other bacterial species.

-	~~Authors~~:	+	Molecular insights into the master regulator CysB-mediated bacterial virulence in Pseudomonas aeruginosa.,Song Y, Yang C, Chen G, Zhang Y, Seng Z, Cai Z, Zhang C, Yang L, Gan J, Liang H Mol Microbiol. 2019 May;111(5):1195-1210. doi: 10.1111/mmi.14200. Epub 2019 Mar, 29. PMID:30618115<ref>PMID:30618115</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 5z4z" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Gan, J]]
		+	[[Category: Liang, H]]
		+	[[Category: Yang, C]]
		+	[[Category: Cysb]]
		+	[[Category: Dna binding protein]]

OCA at 04:58, 7 February 2018

OCA — Wed, 07 Feb 2018 04:58:35 GMT

←Older revision		Revision as of 04:58, 7 February 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5z4z is ON HOLD	+	The entry 5z4z is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5z4z" [edit=sysop:move=sysop]

OCA — Wed, 24 Jan 2018 17:11:34 GMT

Protected "5z4z" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:11, 24 January 2018

OCA: New page: '''Unreleased structure''' The entry 5z4z is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 24 Jan 2018 17:11:33 GMT

New page: '''Unreleased structure''' The entry 5z4z is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5z4z is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]