5zfq - Revision history

OCA at 08:53, 22 November 2023

OCA — Wed, 22 Nov 2023 08:53:26 GMT

←Older revision		Revision as of 08:53, 22 November 2023
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	==Crystal structure of PilT-4, a retraction ATPase motor of Type IV pilus , from Geobacter sulfurreducens==		==Crystal structure of PilT-4, a retraction ATPase motor of Type IV pilus , from Geobacter sulfurreducens==
-	<StructureSection load='5zfq' size='340' side='right' caption='[[5zfq]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='5zfq' size='340' side='right'caption='[[5zfq]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zfq]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Geosl Geosl~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ZFQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zfq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_sulfurreducens_PCA Geobacter sulfurreducens PCA]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZFQ FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~pilT~~-4, ~~GSU1492 (~~[~~http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=243231 GEOSL])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5zfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfq OCA], [~~http~~://pdbe.org/5zfq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5zfq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5zfq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfq OCA], [https://pdbe.org/5zfq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zfq RCSB], [https://www.ebi.ac.uk/pdbsum/5zfq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q74D27_GEOSL Q74D27_GEOSL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geosl~~]]	+	[[Category: Geobacter sulfurreducens PCA]]
-	[[Category: ~~Kapoor, S~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Solanki, V~~]]	+	[[Category: Kapoor S]]
-	[[Category: ~~Thakur, K G~~]]	+	[[Category: Solanki V]]
-	[[Category: ~~Pilt-4]]~~	+	[[Category: Thakur KG]]
-	~~[[Category: Retraction atpase]]~~	+
-	~~[[Category: Transport protein]]~~	+
-	~~[[Category: Type iv pilus~~]]	+

OCA at 08:35, 26 September 2018

OCA — Wed, 26 Sep 2018 08:35:59 GMT

←Older revision		Revision as of 08:35, 26 September 2018
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	<StructureSection load='5zfq' size='340' side='right' caption='[[5zfq]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='5zfq' size='340' side='right' caption='[[5zfq]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zfq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZFQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zfq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Geosl Geosl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZFQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfq OCA], [http://pdbe.org/5zfq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zfq RCSB], [http://www.ebi.ac.uk/pdbsum/5zfq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfq ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilT-4, GSU1492 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243231 GEOSL])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfq OCA], [http://pdbe.org/5zfq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zfq RCSB], [http://www.ebi.ac.uk/pdbsum/5zfq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfq ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Geosl]]
	[[Category: Kapoor, S]]		[[Category: Kapoor, S]]
	[[Category: Solanki, V]]		[[Category: Solanki, V]]

OCA at 19:42, 19 September 2018

OCA — Wed, 19 Sep 2018 19:42:02 GMT

←Older revision		Revision as of 19:42, 19 September 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 5zfq is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of PilT-4, a retraction ATPase motor of Type IV pilus , from Geobacter sulfurreducens==
		+	<StructureSection load='5zfq' size='340' side='right' caption='[[5zfq]], [[Resolution\|resolution]] 2.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5zfq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZFQ FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfq OCA], [http://pdbe.org/5zfq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zfq RCSB], [http://www.ebi.ac.uk/pdbsum/5zfq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfq ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Type IVa pili are bacterial appendages involved in diverse physiological processes, including electron transfer in Geobacter sulfurreducens. ATP hydrolysis coupled with conformational changes powers the extension (PilB) and retraction (PilT) motors in the pilus machinery. We report the unliganded crystal structures of the core ATPase domain of PilB and PilT-4 from G. sulfurreducens at 3.1 and 2.6 A resolution, respectively. PilB structure revealed three distinct conformations, that is, open, closed, and open' which were previously proposed to be mediated by ATP/ADP binding. PilT-4 subunits, on the other hand, were observed in the closed state conformation. We further report that both PilB and PilT-4 hexamers have two high-affinity ATP-binding sites. Comparative structural analysis and solution data presented here supports the "symmetric rotary model" for these ATPase motors. Our data further suggest that pores of these motors rotate either clockwise or counterclockwise to facilitate assembly or disassembly of right-handed or left-handed pilus. DATABASE: Structural data are available in the RCSB PDB database under the PDB ID 5ZFQ (PilT-4), 5ZFR (PilB).

-	~~Authors~~:	+	Structural insights into the mechanism of Type IVa pilus extension and retraction ATPase motors.,Solanki V, Kapoor S, Thakur KG FEBS J. 2018 Sep;285(18):3402-3421. doi: 10.1111/febs.14619. Epub 2018 Aug 18. PMID:30066435<ref>PMID:30066435</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5zfq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Kapoor, S]]
		+	[[Category: Solanki, V]]
		+	[[Category: Thakur, K G]]
		+	[[Category: Pilt-4]]
		+	[[Category: Retraction atpase]]
		+	[[Category: Transport protein]]
		+	[[Category: Type iv pilus]]

OCA at 12:16, 11 April 2018

OCA — Wed, 11 Apr 2018 12:16:34 GMT

←Older revision		Revision as of 12:16, 11 April 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5zfq is ON HOLD	+	The entry 5zfq is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5zfq" [edit=sysop:move=sysop]

OCA — Wed, 14 Mar 2018 05:00:52 GMT

Protected "5zfq" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:00, 14 March 2018

OCA: New page: '''Unreleased structure''' The entry 5zfq is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 14 Mar 2018 05:00:51 GMT

New page: '''Unreleased structure''' The entry 5zfq is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5zfq is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]