5zh6 - Revision history

OCA at 08:54, 22 November 2023

OCA — Wed, 22 Nov 2023 08:54:59 GMT

←Older revision		Revision as of 08:54, 22 November 2023
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	<StructureSection load='5zh6' size='340' side='right'caption='[[5zh6]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='5zh6' size='340' side='right'caption='[[5zh6]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zh6]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Mustelus_griseus Mustelus griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZH6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ZH6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zh6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mustelus_griseus Mustelus griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZH6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZH6 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CA:CALCIUM+ION'>CA</scene~~>, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.54Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[5zgm\|5zgm]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5zh6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zh6 OCA], [~~http~~://pdbe.org/5zh6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5zh6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5zh6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5zh6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zh6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zh6 OCA], [https://pdbe.org/5zh6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zh6 RCSB], [https://www.ebi.ac.uk/pdbsum/5zh6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zh6 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A3F2YLV2_MUSGR A0A3F2YLV2_MUSGR] In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions.[RuleBase:RU368048]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Mustelus griseus]]		[[Category: Mustelus griseus]]
-	[[Category: Cao~~, M J~~]]	+	[[Category: Cao MJ]]
-	[[Category: Chen~~, Y L~~]]	+	[[Category: Chen YL]]
-	[[Category: Jin~~, T C~~]]	+	[[Category: Jin TC]]
-	[[Category: Yang~~, R Q]]~~	+	[[Category: Yang RQ]]
-	~~[[Category: Allergen]]~~	+
-	~~[[Category: Food allergen]]~~	+
-	~~[[Category: Parvalbumin]]~~	+
-	~~[[Category: Sea food allergy~~]]	+

OCA at 15:50, 28 August 2019

OCA — Wed, 28 Aug 2019 15:50:22 GMT

←Older revision		Revision as of 15:50, 28 August 2019
Line 1:		Line 1:

	==Crystal structure of Parvalbumin SPV-II of Mustelus griseus==		==Crystal structure of Parvalbumin SPV-II of Mustelus griseus==
-	<StructureSection load='5zh6' size='340' side='right' caption='[[5zh6]], [[Resolution\|resolution]] 1.54Å' scene=''>	+	<StructureSection load='5zh6' size='340' side='right'caption='[[5zh6]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5zh6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mustelus_griseus Mustelus griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZH6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZH6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5zh6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mustelus_griseus Mustelus griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZH6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZH6 FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 5zh6" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5zh6" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Parvalbumin\|Parvalbumin]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Mustelus griseus]]		[[Category: Mustelus griseus]]
	[[Category: Cao, M J]]		[[Category: Cao, M J]]

OCA at 18:40, 1 August 2018

OCA — Wed, 01 Aug 2018 18:40:15 GMT

←Older revision		Revision as of 18:40, 1 August 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 5zh6 is ~~ON HOLD~~	+	==Crystal structure of Parvalbumin SPV-II of Mustelus griseus==
		+	<StructureSection load='5zh6' size='340' side='right' caption='[[5zh6]], [[Resolution\|resolution]] 1.54Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5zh6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mustelus_griseus Mustelus griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZH6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZH6 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5zgm\|5zgm]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zh6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zh6 OCA], [http://pdbe.org/5zh6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zh6 RCSB], [http://www.ebi.ac.uk/pdbsum/5zh6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zh6 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Fish play important roles in human nutrition and health, but also trigger allergic reactions in some population. Parvalbumin (PV) represents the major allergen of fish. While IgE cross-reactivity to PV in various bony fish species has been well characterized, little information is available about allergens in cartilaginous fish. In this study, two shark PV isoforms (named as SPV-I and SPV-II) from Mustelus griseus were purified. Their identities were further confirmed by mass spectroscopic analysis. IgE immunoblot analysis showed that sera from fish-allergic patients reacted to both SPV-I and SPV-II, but the majority of sera reacted more intensely to SPV-I than SPV-II. Thermal denaturation monitored by CD spectrum showed that both of the SPV allergens are highly thermostable. SPV-I maintained its IgE-binding capability after heat denaturation, while the IgE-binding capability of SPV-II was reduced. The results of crystal structure showed that SPV-I and SPV-II were similar in their overall tertiary structure, but their amino acid sequences shared lower similarities, indicating that the differences in the IgE-binding capabilities of SPV-I and SPV-II might be due to differential antigen epitopes in these two isoforms.

-	~~Authors: Yang~~, ~~R.Q~~., Chen, ~~Y.L.~~, ~~Jin~~, T~~.C.~~, Cao~~, M.~~J.	+	Purification, Characterization, and Crystal Structure of Parvalbumins, the Major Allergens in Mustelus griseus.,Yang RQ, Chen YL, Chen F, Wang H, Zhang Q, Liu GM, Jin T, Cao MJ J Agric Food Chem. 2018 Jul 17. doi: 10.1021/acs.jafc.8b01889. PMID:29969026<ref>PMID:29969026</ref>

-	~~Description: Crystal structure~~ of ~~Parvalbumin SPV-II~~ of ~~Mustelus griseus~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Yang~~, ~~R.Q~~]]	+	<div class="pdbe-citations 5zh6" style="background-color:#fffaf0;"></div>
-	[[Category: Chen, Y.L]]	+	== References ==
-	[[Category: ~~Cao~~, ~~M.J~~]]	+	<references/>
-	[[Category: ~~Jin~~, ~~T.C~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Mustelus griseus]]
		+	[[Category: Cao, M J]]
		+	[[Category: Chen, Y L]]
		+	[[Category: Jin, T C]]
		+	[[Category: Yang, R Q]]
		+	[[Category: Allergen]]
		+	[[Category: Food allergen]]
		+	[[Category: Parvalbumin]]
		+	[[Category: Sea food allergy]]

OCA: Protected "5zh6" [edit=sysop:move=sysop]

OCA — Wed, 21 Mar 2018 05:59:22 GMT

Protected "5zh6" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:59, 21 March 2018

OCA: New page: '''Unreleased structure''' The entry 5zh6 is ON HOLD Authors: Yang, R.Q., Chen, Y.L., Jin, T.C., Cao, M.J. Description: Crystal structure of Parvalbumin SPV-II of Mustelus griseus [[Ca...

OCA — Wed, 21 Mar 2018 05:59:21 GMT

New page: '''Unreleased structure''' The entry 5zh6 is ON HOLD Authors: Yang, R.Q., Chen, Y.L., Jin, T.C., Cao, M.J. Description: Crystal structure of Parvalbumin SPV-II of Mustelus griseus [[Ca...

New page

'''Unreleased structure'''

The entry 5zh6 is ON HOLD

Authors: Yang, R.Q., Chen, Y.L., Jin, T.C., Cao, M.J.

Description: Crystal structure of Parvalbumin SPV-II of Mustelus griseus
[[Category: Unreleased Structures]]
[[Category: Yang, R.Q]]
[[Category: Chen, Y.L]]
[[Category: Cao, M.J]]
[[Category: Jin, T.C]]