5zwl - Revision history

OCA at 10:29, 27 March 2024

OCA — Wed, 27 Mar 2024 10:29:21 GMT

←Older revision		Revision as of 10:29, 27 March 2024
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	==Crystal structure of the gamma - epsilon complex of photosynthetic cyanobacterial F1-ATPase==		==Crystal structure of the gamma - epsilon complex of photosynthetic cyanobacterial F1-ATPase==
-	<StructureSection load='5zwl' size='340' side='right' caption='[[5zwl]], [[Resolution\|resolution]] 1.98Å' scene=''>	+	<StructureSection load='5zwl' size='340' side='right'caption='[[5zwl]], [[Resolution\|resolution]] 1.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zwl]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Theeb Theeb~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZWL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ZWL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zwl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZWL FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~atpC~~, ~~atpE, tlr0526 (~~[~~http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB~~]~~), atpG, atpC, tll0385 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=197221 THEEB])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.98Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5zwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zwl OCA], [~~http~~://pdbe.org/5zwl PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5zwl RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5zwl PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5zwl ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zwl OCA], [https://pdbe.org/5zwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zwl RCSB], [https://www.ebi.ac.uk/pdbsum/5zwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zwl ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~ATPE_THEEB ATPE_THEEB]~~] Produces ATP from ADP in the presence of a proton gradient across the membrane.~~[HAMAP-Rule:MF_00530] The complex from the organism is particularly stable to disruption and remains functional after 6 hrs at 55 degrees Celsius.[HAMAP-Rule:MF_00530] [[http~~://www.uniprot.org/uniprot/ATPG_THEEB ATPG_THEEB]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. The complex from the organism is particularly stable to disruption and remains functional after 6 ~~hrs~~ at 55 degrees Celsius.<ref>PMID:18206981</ref>	+	[https://www.uniprot.org/uniprot/ATPE_THEVB ATPE_THEVB] Produces ATP from ADP in the presence of a proton gradient across the membrane.<ref>PMID:18206981</ref> The complex from the organism is particularly stable to disruption and remains functional after 6 hours at 55 degrees Celsius.<ref>PMID:18206981</ref>
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	F1-ATPase forms the membrane-associated segment of F0F1-ATP synthase - the fundamental enzyme complex in cellular bioenergetics for ATP hydrolysis and synthesis. Here, we report a crystal structure of the central F1 subcomplex, consisting of the rotary shaft gamma subunit and the inhibitory epsilon subunit, from the photosynthetic cyanobacterium Thermosynechococcus elongatus BP-1, at 1.98 A resolution. In contrast with their homologous bacterial and mitochondrial counterparts, the gamma subunits of photosynthetic organisms harbour a unique insertion of 35-40 amino acids. Our structural data reveal that this region forms a beta-hairpin structure along the central stalk. We identified numerous critical hydrogen bonds and electrostatic interactions between residues in the hairpin and the rest of the gamma subunit. To elaborate the critical function of this beta-hairpin in inhibiting ATP hydrolysis, the corresponding domain was deleted in the cyanobacterial F1 subcomplex. Biochemical analyses of the corresponding alpha3beta3gamma complex confirm that the clinch of the hairpin structure plays a critical role and accounts for a significant interaction in the alpha3beta3 complex to induce ADP inhibition during ATP hydrolysis. In addition, we found that truncating the beta-hairpin insertion structure resulted in a marked impairment of the interaction with the epsilon subunit, which binds to the opposite side of the gamma subunit from the beta-hairpin structure. Combined with structural analyses, our work provides experimental evidence supporting the molecular principle of how the insertion region of the gamma subunit suppresses F1 rotation during ATP hydrolysis.	+

-	Structure of the gamma-epsilon complex of cyanobacterial F1-ATPase reveals a suppression mechanism of the gamma subunit on ATP hydrolysis in phototrophs.,Murakami S, Kondo K, Katayama S, Hara S, Sunamura EI, Yamashita E, Groth G, Hisabori T Biochem J. 2018 Sep 18;475(18):2925-2939. doi: 10.1042/BCJ20180481. PMID:30054433<ref>PMID:30054433</ref>	+	==See Also==
-		+	*[[ATPase 3D structures\|ATPase 3D structures]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class~~=~~"pdbe-citations 5zwl" style~~=~~"background-color:#fffaf0;"></div>~~	+
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Theeb~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Hisabori, T~~]]	+	[[Category: Thermosynechococcus vestitus BP-1]]
-	[[Category: ~~Murakami, S~~]]	+	[[Category: Hisabori T]]
-	[[Category: ~~Yamashita, E~~]]	+	[[Category: Murakami S]]
-	[[Category: ~~Atp synthase gamma epsilon cyanobacteria redox regulation]]~~	+	[[Category: Yamashita E]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 08:38, 3 October 2018

OCA — Wed, 03 Oct 2018 08:38:12 GMT

←Older revision		Revision as of 08:38, 3 October 2018
Line 3:		Line 3:
	<StructureSection load='5zwl' size='340' side='right' caption='[[5zwl]], [[Resolution\|resolution]] 1.98Å' scene=''>		<StructureSection load='5zwl' size='340' side='right' caption='[[5zwl]], [[Resolution\|resolution]] 1.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zwl]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZWL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZWL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zwl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Theeb Theeb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZWL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZWL FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zwl OCA], [http://pdbe.org/5zwl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zwl RCSB], [http://www.ebi.ac.uk/pdbsum/5zwl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zwl ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpC, atpE, tlr0526 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB]), atpG, atpC, tll0385 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zwl OCA], [http://pdbe.org/5zwl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zwl RCSB], [http://www.ebi.ac.uk/pdbsum/5zwl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zwl ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theeb]]
	[[Category: Hisabori, T]]		[[Category: Hisabori, T]]
	[[Category: Murakami, S]]		[[Category: Murakami, S]]

OCA at 07:58, 26 September 2018

OCA — Wed, 26 Sep 2018 07:58:23 GMT

←Older revision		Revision as of 07:58, 26 September 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5zwl is ~~ON HOLD~~ ~~until May 16 2020~~	+	==Crystal structure of the gamma - epsilon complex of photosynthetic cyanobacterial F1-ATPase==
		+	<StructureSection load='5zwl' size='340' side='right' caption='[[5zwl]], [[Resolution\|resolution]] 1.98Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5zwl]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZWL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZWL FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zwl OCA], [http://pdbe.org/5zwl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zwl RCSB], [http://www.ebi.ac.uk/pdbsum/5zwl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zwl ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ATPE_THEEB ATPE_THEEB]] Produces ATP from ADP in the presence of a proton gradient across the membrane.[HAMAP-Rule:MF_00530] The complex from the organism is particularly stable to disruption and remains functional after 6 hrs at 55 degrees Celsius.[HAMAP-Rule:MF_00530] [[http://www.uniprot.org/uniprot/ATPG_THEEB ATPG_THEEB]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. The complex from the organism is particularly stable to disruption and remains functional after 6 hrs at 55 degrees Celsius.<ref>PMID:18206981</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	F1-ATPase forms the membrane-associated segment of F0F1-ATP synthase - the fundamental enzyme complex in cellular bioenergetics for ATP hydrolysis and synthesis. Here, we report a crystal structure of the central F1 subcomplex, consisting of the rotary shaft gamma subunit and the inhibitory epsilon subunit, from the photosynthetic cyanobacterium Thermosynechococcus elongatus BP-1, at 1.98 A resolution. In contrast with their homologous bacterial and mitochondrial counterparts, the gamma subunits of photosynthetic organisms harbour a unique insertion of 35-40 amino acids. Our structural data reveal that this region forms a beta-hairpin structure along the central stalk. We identified numerous critical hydrogen bonds and electrostatic interactions between residues in the hairpin and the rest of the gamma subunit. To elaborate the critical function of this beta-hairpin in inhibiting ATP hydrolysis, the corresponding domain was deleted in the cyanobacterial F1 subcomplex. Biochemical analyses of the corresponding alpha3beta3gamma complex confirm that the clinch of the hairpin structure plays a critical role and accounts for a significant interaction in the alpha3beta3 complex to induce ADP inhibition during ATP hydrolysis. In addition, we found that truncating the beta-hairpin insertion structure resulted in a marked impairment of the interaction with the epsilon subunit, which binds to the opposite side of the gamma subunit from the beta-hairpin structure. Combined with structural analyses, our work provides experimental evidence supporting the molecular principle of how the insertion region of the gamma subunit suppresses F1 rotation during ATP hydrolysis.

-	~~Authors~~:	+	Structure of the gamma-epsilon complex of cyanobacterial F1-ATPase reveals a suppression mechanism of the gamma subunit on ATP hydrolysis in phototrophs.,Murakami S, Kondo K, Katayama S, Hara S, Sunamura EI, Yamashita E, Groth G, Hisabori T Biochem J. 2018 Sep 18;475(18):2925-2939. doi: 10.1042/BCJ20180481. PMID:30054433<ref>PMID:30054433</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5zwl" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Hisabori, T]]
		+	[[Category: Murakami, S]]
		+	[[Category: Yamashita, E]]
		+	[[Category: Atp synthase gamma epsilon cyanobacteria redox regulation]]
		+	[[Category: Hydrolase]]

OCA at 03:51, 20 June 2018

OCA — Wed, 20 Jun 2018 03:51:31 GMT

←Older revision		Revision as of 03:51, 20 June 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5zwl is ON HOLD	+	The entry 5zwl is ON HOLD until May 16 2020

	Authors:		Authors:

OCA: Protected "5zwl" [edit=sysop:move=sysop]

OCA — Wed, 23 May 2018 05:53:11 GMT

Protected "5zwl" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:53, 23 May 2018

OCA: New page: '''Unreleased structure''' The entry 5zwl is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 23 May 2018 05:53:10 GMT

New page: '''Unreleased structure''' The entry 5zwl is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5zwl is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]