6a3k - Revision history

OCA at 10:59, 2 October 2019

OCA — Wed, 02 Oct 2019 10:59:26 GMT

←Older revision		Revision as of 10:59, 2 October 2019
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	<StructureSection load='6a3k' size='340' side='right'caption='[[6a3k]], [[Resolution\|resolution]] 1.71Å' scene=''>		<StructureSection load='6a3k' size='340' side='right'caption='[[6a3k]], [[Resolution\|resolution]] 1.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6a3k]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A3K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A3K FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6a3k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shesp Shesp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A3K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A3K FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=~~HEM~~:~~PROTOPORPHYRIN+IX+CONTAINING~~+FE'>~~HEM~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a3k OCA], [http://pdbe.org/6a3k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a3k RCSB], [http://www.ebi.ac.uk/pdbsum/6a3k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a3k ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a3k OCA], [http://pdbe.org/6a3k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a3k RCSB], [http://www.ebi.ac.uk/pdbsum/6a3k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a3k ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Shesp]]
	[[Category: Fujii, S]]		[[Category: Fujii, S]]
	[[Category: Kato, Y]]		[[Category: Kato, Y]]

OCA at 05:25, 12 June 2019

OCA — Wed, 12 Jun 2019 05:25:56 GMT

←Older revision		Revision as of 05:25, 12 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6a3k is ~~ON HOLD until Jun 15 2020~~	+	==Crystal structure of cytochrome c' from Shewanella benthica DB6705==
		+	<StructureSection load='6a3k' size='340' side='right'caption='[[6a3k]], [[Resolution\|resolution]] 1.71Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6a3k]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A3K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A3K FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a3k OCA], [http://pdbe.org/6a3k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a3k RCSB], [http://www.ebi.ac.uk/pdbsum/6a3k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a3k ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The stability of dimeric cytochrome c' from a thermophile, as compared with that of a homologous mesophilic counterpart, is attributed to strengthened interactions around the heme and at the subunit-subunit interface, both of which are molecular interior regions. Here, we showed that interactions in the equivalent interior regions of homologous cytochromes c' from two psychrophiles, Shewanella benthica and Shewanella violacea (SBCP and SVCP, respectively) were similarly weakened as compared with those of the counterparts of psychrophilic Shewanella livingstonensis and mesophilic Shewanella amazonensis (SLCP and SACP, respectively), and consistently the stability of SVCP, SLCP, and SACP increased in that order. Therefore, the stability of cytochromes c' from the psychrophile, mesophile, and thermophile is systematically regulated in their molecular interior regions. Unexpectedly, however, the stability of SBCP was significantly higher than that of SVCP, and the former had additional molecular surface interactions. Collectively, SBCP had weakened interior interactions like SVCP did, but the former was stabilized at the molecular surface as compared with the latter, implying complex multiple adaptation of the proteins because the psychrophilic sources of SBCP and SVCP are also piezophilic, thriving in deep-sea extreme environments of low temperature and high hydrostatic pressure.

-	~~Authors~~: ~~Suka~~, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.	+	Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.,Suka A, Oki H, Kato Y, Kawahara K, Ohkubo T, Maruno T, Kobayashi Y, Fujii S, Wakai S, Lisdiana L, Sambongi Y Extremophiles. 2019 Mar;23(2):239-248. doi: 10.1007/s00792-019-01077-9. Epub 2019, Jan 28. PMID:30689055<ref>PMID:30689055</ref>

-	~~Description: Crystal structure~~ of ~~cytochrome c' from Shewanella benthica DB6705~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Wakai, S]]~~	+	<div class="pdbe-citations 6a3k" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Kawahara, K~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Fujii, S]]		[[Category: Fujii, S]]
-	[[Category: Maruno, T]]
-	[[Category: Ohkubo, T]]
	[[Category: Kato, Y]]		[[Category: Kato, Y]]
-	[[Category: ~~Sambongi~~, Y]]	+	[[Category: Kawahara, K]]
	[[Category: Kobayashi, Y]]		[[Category: Kobayashi, Y]]
		+	[[Category: Maruno, T]]
		+	[[Category: Ohkubo, T]]
	[[Category: Oki, H]]		[[Category: Oki, H]]
		+	[[Category: Sambongi, Y]]
	[[Category: Suka, A]]		[[Category: Suka, A]]
		+	[[Category: Wakai, S]]
		+	[[Category: Cytochrome css']]
		+	[[Category: Electron transport]]
		+	[[Category: Shewanella]]

OCA at 05:06, 18 July 2018

OCA — Wed, 18 Jul 2018 05:06:57 GMT

←Older revision		Revision as of 05:06, 18 July 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6a3k is ON HOLD	+	The entry 6a3k is ON HOLD until Jun 15 2020

	Authors: Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.		Authors: Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.

OCA: Protected "6a3k" [edit=sysop:move=sysop]

OCA — Wed, 27 Jun 2018 03:51:28 GMT

Protected "6a3k" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:51, 27 June 2018

OCA: New page: '''Unreleased structure''' The entry 6a3k is ON HOLD Authors: Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y. Descr...

OCA — Wed, 27 Jun 2018 03:51:27 GMT

New page: '''Unreleased structure''' The entry 6a3k is ON HOLD Authors: Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y. Descr...

New page

'''Unreleased structure'''

The entry 6a3k is ON HOLD

Authors: Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.

Description: Crystal structure of cytochrome c' from Shewanella benthica DB6705
[[Category: Unreleased Structures]]
[[Category: Wakai, S]]
[[Category: Kawahara, K]]
[[Category: Fujii, S]]
[[Category: Maruno, T]]
[[Category: Ohkubo, T]]
[[Category: Kato, Y]]
[[Category: Sambongi, Y]]
[[Category: Kobayashi, Y]]
[[Category: Oki, H]]
[[Category: Suka, A]]