6a65 - Revision history

OCA at 21:26, 28 October 2020

OCA — Wed, 28 Oct 2020 21:26:23 GMT

←Older revision		Revision as of 21:26, 28 October 2020
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	==Placental protein 13/galectin-13 variant R53HR55N with Tris==		==Placental protein 13/galectin-13 variant R53HR55N with Tris==
-	<StructureSection load='6a65' size='340' side='right' caption='[[6a65]], [[Resolution\|resolution]] 1.77Å' scene=''>	+	<StructureSection load='6a65' size='340' side='right'caption='[[6a65]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6a65]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A65 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6A65 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6a65]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A65 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6A65 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6a65 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a65 OCA], [http://pdbe.org/6a65 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a65 RCSB], [http://www.ebi.ac.uk/pdbsum/6a65 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a65 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6a65 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a65 OCA], [http://pdbe.org/6a65 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a65 RCSB], [http://www.ebi.ac.uk/pdbsum/6a65 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a65 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 6a65" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6a65" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Galectin 3D structures\|Galectin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Su, J]]		[[Category: Su, J]]
	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]

OCA at 08:13, 26 December 2018

OCA — Wed, 26 Dec 2018 08:13:38 GMT

←Older revision		Revision as of 08:13, 26 December 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 6a65 is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Placental protein 13/galectin-13 variant R53HR55N with Tris==
		+	<StructureSection load='6a65' size='340' side='right' caption='[[6a65]], [[Resolution\|resolution]] 1.77Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6a65]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A65 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A65 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a65 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a65 OCA], [http://pdbe.org/6a65 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a65 RCSB], [http://www.ebi.ac.uk/pdbsum/6a65 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a65 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PP13_HUMAN PP13_HUMAN]] Binds beta-galactoside and lactose. Strong inducer of T-cell apoptosis.<ref>PMID:10527825</ref> <ref>PMID:19497882</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Placental protein 13/galectin-13 (Gal-13) is highly expressed in placenta, where its lower expression is related to pre-eclampsia. Recently, the crystal structures of wild-type Gal-13 and its variant R53H at high resolution were solved. The crystallographic and biochemical results showed that Gal-13 and R53H could not bind lactose. Here, we used site-directed mutagenesis to re-engineer the ligand binding site of wild-type Gal-13, so that it could bind lactose. Of six newly engineered mutants, we were able to solve the crystal structures of four of them. Three variants (R53HH57R, R53HH57RD33G and R53HR55NH57RD33G had the same two mutations (R53 to H, and H57 to R) and were able to bind lactose in the crystal, indicating that these mutations were sufficient for recovering the ability of Gal-13 to bind lactose. Moreover, the structures of R53H and R53HR55N show that these variants could co-crystallize with a molecule of Tris. Surprisingly, although these variants, as well as wild-type Gal-13, could all induce hemagglutination, high concentrations of lactose could not inhibit agglutination, nor could they bind to lactose-modified Sepharose 6b beads. Overall, our results indicate that Gal-3 is not a normal galectin, which could not bind to beta-galactosides. Lastly, the distribution of EGFP-tagged wild-type Gal-13 and its variants in HeLa cells showed that they are concentrated in the nucleus and could be co-localized within filamentary materials, possibly actin.

-	~~Authors: Su~~, J.Y.	+	Resetting the ligand binding site of placental protein 13/galectin-13 recovers its ability to bind lactose.,Su J, Cui L, Si Y, Song C, Li Y, Yang T, Wang H, Mayo KH, Tai G, Zhou Y Biosci Rep. 2018 Dec 14;38(6). pii: BSR20181787. doi: 10.1042/BSR20181787. Print , 2018 Dec 21. PMID:30413611<ref>PMID:30413611</ref>

-	~~Description: Placental protein 13~~/~~galectin~~-~~13 variant R53HR55N with Tris~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Su, J.Y~~]]	+	<div class="pdbe-citations 6a65" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Su, J]]
		+	[[Category: Sugar binding protein]]

OCA at 16:51, 1 August 2018

OCA — Wed, 01 Aug 2018 16:51:39 GMT

←Older revision		Revision as of 16:51, 1 August 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6a65 is ON HOLD	+	The entry 6a65 is ON HOLD until Paper Publication

	Authors: Su, J.Y.		Authors: Su, J.Y.

OCA: Protected "6a65" [edit=sysop:move=sysop]

OCA — Wed, 04 Jul 2018 05:33:32 GMT

Protected "6a65" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:33, 4 July 2018

OCA: New page: '''Unreleased structure''' The entry 6a65 is ON HOLD Authors: Su, J.Y. Description: Placental protein 13/galectin-13 variant R53HR55N with Tris Category: Unreleased Structures [[Ca...

OCA — Wed, 04 Jul 2018 05:33:31 GMT

New page: '''Unreleased structure''' The entry 6a65 is ON HOLD Authors: Su, J.Y. Description: Placental protein 13/galectin-13 variant R53HR55N with Tris Category: Unreleased Structures [[Ca...

New page

'''Unreleased structure'''

The entry 6a65 is ON HOLD

Authors: Su, J.Y.

Description: Placental protein 13/galectin-13 variant R53HR55N with Tris
[[Category: Unreleased Structures]]
[[Category: Su, J.Y]]