6aiq - Revision history

OCA at 09:31, 22 November 2023

OCA — Wed, 22 Nov 2023 09:31:51 GMT

←Older revision		Revision as of 09:31, 22 November 2023
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	<StructureSection load='6aiq' size='340' side='right'caption='[[6aiq]], [[Resolution\|resolution]] 0.85Å' scene=''>		<StructureSection load='6aiq' size='340' side='right'caption='[[6aiq]], [[Resolution\|resolution]] 0.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6aiq]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AIQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6AIQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6aiq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AIQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6AIQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 0.85Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6aiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aiq OCA], [~~http~~://pdbe.org/6aiq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6aiq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6aiq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6aiq ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6aiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aiq OCA], [https://pdbe.org/6aiq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6aiq RCSB], [https://www.ebi.ac.uk/pdbsum/6aiq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6aiq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/HIP_THETI HIP_THETI]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.	+	[https://www.uniprot.org/uniprot/HIP_THETI HIP_THETI] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Hanazono, Y~~]]	+	[[Category: Thermochromatium tepidum]]
-	[[Category: ~~Miki, K~~]]	+	[[Category: Hanazono Y]]
-	[[Category: ~~Takeda,~~ K]]	+	[[Category: Miki K]]
-	[[Category: ~~Iron-sulfur protein]]~~	+	[[Category: Takeda K]]
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Metal-binding protein~~]]	+

OCA at 05:49, 21 August 2019

OCA — Wed, 21 Aug 2019 05:49:13 GMT

←Older revision		Revision as of 05:49, 21 August 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6aiq is ~~ON HOLD until Paper~~ Publication	+	==High resolution structure of recombinant high-potential iron-sulfur protein==
		+	<StructureSection load='6aiq' size='340' side='right'caption='[[6aiq]], [[Resolution\|resolution]] 0.85Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6aiq]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AIQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AIQ FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6aiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aiq OCA], [http://pdbe.org/6aiq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aiq RCSB], [http://www.ebi.ac.uk/pdbsum/6aiq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aiq ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HIP_THETI HIP_THETI]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Perdeuteration in neutron crystallography is an effective method for determining the positions of hydrogen atoms in proteins. However, there is shortage of evidence that the high-resolution details of perdeuterated proteins are consistent with those of the nondeuterated proteins. In this study, we determined the X-ray structure of perdeuterated high-potential iron-sulfur protein (HiPIP) at a high resolution of 0.85 a resolution. The comparison of the nondeuterated and perdeuterated structures of HiPIP revealed slight differences between the two structures. The spectroscopic and spectroelectrochemical studies also showed that perdeuterated HiPIP has approximately the same characteristics as nondeuterated HiPIP. These results further emphasize the suitability of using perdeuterated proteins in the high-resolution neutron crystallography.

-	~~Authors: Hanazono~~, Y., Takeda, K., Miki, K.	+	Characterization of perdeuterated high-potential iron-sulfur protein with high-resolution X-ray crystallography.,Hanazono Y, Takeda K, Miki K Proteins. 2019 Jul 31. doi: 10.1002/prot.25793. PMID:31365157<ref>PMID:31365157</ref>

-	~~Description: High resolution structure~~ of ~~recombinant high~~-~~potential iron~~-~~sulfur protein~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: ~~Takeda, K~~]]	+	<div class="pdbe-citations 6aiq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Hanazono, Y]]		[[Category: Hanazono, Y]]
	[[Category: Miki, K]]		[[Category: Miki, K]]
		+	[[Category: Takeda, K]]
		+	[[Category: Iron-sulfur protein]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Metal-binding protein]]

OCA at 18:02, 19 September 2018

OCA — Wed, 19 Sep 2018 18:02:23 GMT

←Older revision		Revision as of 18:02, 19 September 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6aiq is ON HOLD	+	The entry 6aiq is ON HOLD until Paper Publication

	Authors: Hanazono, Y., Takeda, K., Miki, K.		Authors: Hanazono, Y., Takeda, K., Miki, K.

OCA: Protected "6aiq" [edit=sysop:move=sysop]

OCA — Wed, 29 Aug 2018 05:37:04 GMT

Protected "6aiq" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:37, 29 August 2018

OCA: New page: '''Unreleased structure''' The entry 6aiq is ON HOLD Authors: Hanazono, Y., Takeda, K., Miki, K. Description: High resolution structure of recombinant high-potential iron-sulfur protei...

OCA — Wed, 29 Aug 2018 05:37:02 GMT

New page: '''Unreleased structure''' The entry 6aiq is ON HOLD Authors: Hanazono, Y., Takeda, K., Miki, K. Description: High resolution structure of recombinant high-potential iron-sulfur protei...

New page

'''Unreleased structure'''

The entry 6aiq is ON HOLD

Authors: Hanazono, Y., Takeda, K., Miki, K.

Description: High resolution structure of recombinant high-potential iron-sulfur protein
[[Category: Unreleased Structures]]
[[Category: Takeda, K]]
[[Category: Hanazono, Y]]
[[Category: Miki, K]]