6bsy - Revision history

OCA at 14:49, 4 October 2023

OCA — Wed, 04 Oct 2023 14:49:43 GMT

←Older revision		Revision as of 14:49, 4 October 2023
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	<StructureSection load='6bsy' size='340' side='right'caption='[[6bsy]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='6bsy' size='340' side='right'caption='[[6bsy]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6bsy]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~9hiv1 9hiv1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BSY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6BSY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6bsy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BSY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BSY FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.25Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[2x7l\|2x7l]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~"><~~b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">rev ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 9HIV1])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6bsy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bsy OCA], [https://pdbe.org/6bsy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6bsy RCSB], [https://www.ebi.ac.uk/pdbsum/6bsy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6bsy ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6bsy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bsy OCA], [~~http~~://pdbe.org/6bsy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6bsy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6bsy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6bsy ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/REV_HV1B1 REV_HV1B1] Escorts unspliced or incompletely spliced viral pre-mRNAs (late transcripts) out of the nucleus of infected cells. These pre-mRNAs carry a recognition sequence called Rev responsive element (RRE) located in the env gene, that is not present in fully spliced viral mRNAs (early transcripts). This function is essential since most viral proteins are translated from unspliced or partially spliced pre-mRNAs which cannot exit the nucleus by the pathway used by fully processed cellular mRNAs. Rev itself is translated from a fully spliced mRNA that readily exits the nucleus. Rev's nuclear localization signal (NLS) binds directly to KPNB1/Importin beta-1 without previous binding to KPNA1/Importin alpha-1. KPNB1 binds to the GDP bound form of RAN (Ran-GDP) and targets Rev to the nucleus. In the nucleus, the conversion from Ran-GDP to Ran-GTP dissociates Rev from KPNB1 and allows Rev's binding to the RRE in viral pre-mRNAs. Rev multimerization on the RRE via cooperative assembly exposes its nuclear export signal (NES) to the surface. Rev can then form a complex with XPO1/CRM1 and Ran-GTP, leading to nuclear export of the complex. Conversion from Ran-GTP to Ran-GDP mediates dissociation of the Rev/RRE/XPO1/RAN complex, so that Rev can return to the nucleus for a subsequent round of export. Beside KPNB1, also seems to interact with TNPO1/Transportin-1, RANBP5/IPO5 and IPO7/RANBP7 for nuclear import. The nucleoporin-like HRB/RIP is an essential cofactor that probably indirectly interacts with Rev to release HIV RNAs from the perinuclear region to the cytoplasm (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human immunodeficiency virus 1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Eren, E]]	+	[[Category: Eren E]]
-	[[Category: Steven~~, A C~~]]	+	[[Category: Steven AC]]
-	[[Category: Wang~~, Y X~~]]	+	[[Category: Wang YX]]
-	[[Category: Watts~~, N R~~]]	+	[[Category: Watts NR]]
-	[[Category: Wingfield~~, P T~~]]	+	[[Category: Wingfield PT]]
-	[[Category: Zhuang, X]]	+	[[Category: Zhuang X]]
-	~~[[Category: Hiv]]~~	+
-	~~[[Category: Rev]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 17:51, 11 December 2019

OCA — Wed, 11 Dec 2019 17:51:00 GMT

←Older revision		Revision as of 17:51, 11 December 2019
Line 1:		Line 1:

	==HIV-1 Rev assembly domain (residues 1-69)==		==HIV-1 Rev assembly domain (residues 1-69)==
-	<StructureSection load='6bsy' size='340' side='right' caption='[[6bsy]], [[Resolution\|resolution]] 2.25Å' scene=''>	+	<StructureSection load='6bsy' size='340' side='right'caption='[[6bsy]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6bsy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BSY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BSY FirstGlance]. <br>		<table><tr><td colspan='2'>[[6bsy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BSY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BSY FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 6bsy" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6bsy" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Protein Rev\|Protein Rev]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Eren, E]]		[[Category: Eren, E]]
	[[Category: Steven, A C]]		[[Category: Steven, A C]]

OCA at 07:38, 4 July 2018

OCA — Wed, 04 Jul 2018 07:38:42 GMT

←Older revision		Revision as of 07:38, 4 July 2018
Line 3:		Line 3:
	<StructureSection load='6bsy' size='340' side='right' caption='[[6bsy]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='6bsy' size='340' side='right' caption='[[6bsy]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6bsy]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BSY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BSY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6bsy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BSY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BSY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2x7l\|2x7l]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2x7l\|2x7l]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rev ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 9HIV1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bsy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bsy OCA], [http://pdbe.org/6bsy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bsy RCSB], [http://www.ebi.ac.uk/pdbsum/6bsy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bsy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bsy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bsy OCA], [http://pdbe.org/6bsy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bsy RCSB], [http://www.ebi.ac.uk/pdbsum/6bsy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bsy ProSAT]</span></td></tr>
	</table>		</table>

OCA at 13:51, 11 April 2018

OCA — Wed, 11 Apr 2018 13:51:03 GMT

←Older revision		Revision as of 13:51, 11 April 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6bsy is ~~ON HOLD~~	+	==HIV-1 Rev assembly domain (residues 1-69)==
		+	<StructureSection load='6bsy' size='340' side='right' caption='[[6bsy]], [[Resolution\|resolution]] 2.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6bsy]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BSY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BSY FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2x7l\|2x7l]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bsy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bsy OCA], [http://pdbe.org/6bsy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bsy RCSB], [http://www.ebi.ac.uk/pdbsum/6bsy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bsy ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	HIV-1 Rev mediates the nuclear export of unspliced and partially-spliced viral transcripts for the production of progeny genomes and structural proteins. In this process, four (or more) copies of Rev assemble onto a highly-structured 351-nt region in such viral transcripts, the Rev response element (RRE). How this occurs is not known. The Rev assembly domain has a helical-hairpin structure which associates through three (A-A, B-B and C-C) interfaces. The RRE has the topology of an upper-case letter A, with the two known Rev binding sites mapping onto the legs of the A. We have determined a crystal structure for the Rev assembly domain at 2.25A resolution, without resort to either mutations or chaperones. It shows that B-B dimers adopt an arrangement reversed relative to that previously reported, and join through a C-C interface to form tetramers. The new subunit arrangement shows how four Rev molecules can assemble on the two sites on the RRE to form the specificity checkpoint, and how further copies add through A-A interactions. Residues at the C-C interface, specifically the Pro31-Trp45 axis, are a potential target for intervention.

-	~~Authors:~~ Watts~~, N.R.~~, Eren, E., Zhuang, X., Wang~~, Y.X.~~, Steven, A.C., ~~Wingfield, P~~.T.	+	A new HIV-1 Rev structure optimizes interaction with target RNA (RRE) for nuclear export.,Watts NR, Eren E, Zhuang X, Wang YX, Steven AC, Wingfield PT J Struct Biol. 2018 Mar 29. pii: S1047-8477(18)30088-1. doi:, 10.1016/j.jsb.2018.03.011. PMID:29605570<ref>PMID:29605570</ref>

-	~~Description: HIV~~-~~1 Rev assembly domain (residues 1~~-~~69)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	~~[[Category: Wang, Y.X]]~~	+	<div class="pdbe-citations 6bsy" style="background-color:#fffaf0;"></div>
-	~~[[Category: Steven, A.C]]~~	+	== References ==
-	~~[[Category: Zhuang, X]]~~	+	<references/>
-	~~[[Category: Wingfield, P.T]]~~	+	__TOC__
		+	</StructureSection>
	[[Category: Eren, E]]		[[Category: Eren, E]]
-	[[Category: Watts, N.R]]	+	[[Category: Steven, A C]]
		+	[[Category: Wang, Y X]]
		+	[[Category: Watts, N R]]
		+	[[Category: Wingfield, P T]]
		+	[[Category: Zhuang, X]]
		+	[[Category: Hiv]]
		+	[[Category: Rev]]
		+	[[Category: Viral protein]]

OCA: Protected "6bsy" [edit=sysop:move=sysop]

OCA — Wed, 13 Dec 2017 05:55:15 GMT

Protected "6bsy" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:55, 13 December 2017

OCA: New page: '''Unreleased structure''' The entry 6bsy is ON HOLD Authors: Watts, N.R., Eren, E., Zhuang, X., Wang, Y.X., Steven, A.C., Wingfield, P.T. Description: HIV-1 Rev assembly domain (resid...

OCA — Wed, 13 Dec 2017 05:55:14 GMT

New page: '''Unreleased structure''' The entry 6bsy is ON HOLD Authors: Watts, N.R., Eren, E., Zhuang, X., Wang, Y.X., Steven, A.C., Wingfield, P.T. Description: HIV-1 Rev assembly domain (resid...

New page

'''Unreleased structure'''

The entry 6bsy is ON HOLD

Authors: Watts, N.R., Eren, E., Zhuang, X., Wang, Y.X., Steven, A.C., Wingfield, P.T.

Description: HIV-1 Rev assembly domain (residues 1-69)
[[Category: Unreleased Structures]]
[[Category: Wang, Y.X]]
[[Category: Steven, A.C]]
[[Category: Zhuang, X]]
[[Category: Wingfield, P.T]]
[[Category: Eren, E]]
[[Category: Watts, N.R]]