6cg9 - Revision history

OCA at 15:04, 4 October 2023

OCA — Wed, 04 Oct 2023 15:04:18 GMT

←Older revision		Revision as of 15:04, 4 October 2023
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	<StructureSection load='6cg9' size='340' side='right'caption='[[6cg9]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6cg9' size='340' side='right'caption='[[6cg9]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6cg9]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Maize Maize~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CG9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6CG9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6cg9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CG9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CG9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>~~, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http:~~/~~/en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase]~~, ~~with EC number [http~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6cg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cg9 OCA], [~~http~~://pdbe.org/6cg9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6cg9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6cg9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6cg9 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cg9 OCA], [https://pdbe.org/6cg9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cg9 RCSB], [https://www.ebi.ac.uk/pdbsum/6cg9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cg9 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TPIS_MAIZE TPIS_MAIZE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Maize]]~~	+	[[Category: Zea mays]]
-	~~[[Category: Triose-phosphate isomerase~~]]	+	[[Category: Fernandez-Velasco DA]]
-	[[Category: Fernandez-Velasco~~, D A~~]]	+	[[Category: Rodriguez-Romero A]]
-	[[Category: Rodriguez-Romero, A]]	+	[[Category: Romero-Romero S]]
-	[[Category: Romero-Romero, S]]	+
-	~~[[Category: Glycolysis]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Tim-barrel~~]]	+

OCA at 08:56, 11 November 2020

OCA — Wed, 11 Nov 2020 08:56:58 GMT

←Older revision		Revision as of 08:56, 11 November 2020
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	==Crystal structure of Triosephosphate Isomerase from Zea mays (mexican corn)==		==Crystal structure of Triosephosphate Isomerase from Zea mays (mexican corn)==
-	<StructureSection load='6cg9' size='340' side='right' caption='[[6cg9]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='6cg9' size='340' side='right'caption='[[6cg9]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6cg9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CG9 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6CG9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6cg9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CG9 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6CG9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6cg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cg9 OCA], [http://pdbe.org/6cg9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cg9 RCSB], [http://www.ebi.ac.uk/pdbsum/6cg9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cg9 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6cg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cg9 OCA], [http://pdbe.org/6cg9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cg9 RCSB], [http://www.ebi.ac.uk/pdbsum/6cg9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cg9 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 6cg9" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6cg9" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Triose phosphate isomerase 3D structures\|Triose phosphate isomerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Maize]]		[[Category: Maize]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]

OCA at 08:33, 17 October 2018

OCA — Wed, 17 Oct 2018 08:33:58 GMT

←Older revision		Revision as of 08:33, 17 October 2018
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	<StructureSection load='6cg9' size='340' side='right' caption='[[6cg9]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6cg9' size='340' side='right' caption='[[6cg9]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6cg9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CG9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CG9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6cg9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CG9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CG9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Maize]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]
	[[Category: Fernandez-Velasco, D A]]		[[Category: Fernandez-Velasco, D A]]

OCA at 08:05, 10 October 2018

OCA — Wed, 10 Oct 2018 08:05:06 GMT

←Older revision		Revision as of 08:05, 10 October 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 6cg9 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of Triosephosphate Isomerase from Zea mays (mexican corn)==
		+	<StructureSection load='6cg9' size='340' side='right' caption='[[6cg9]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6cg9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CG9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CG9 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cg9 OCA], [http://pdbe.org/6cg9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cg9 RCSB], [http://www.ebi.ac.uk/pdbsum/6cg9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cg9 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We studied the structure, function and thermodynamic properties for the unfolding of the Triosephosphate isomerase (TIM) from Zea mays (ZmTIM). ZmTIM shows a catalytic efficiency close to the diffusion limit. Native ZmTIM is a dimer that dissociates upon dilution into inactive and unfolded monomers. Its thermal unfolding is irreversible with a Tm of 61.6+/-1.4 degrees C and an activation energy of 383.4+/-11.5kJmol(-1). The urea-induced unfolding of ZmTIM is reversible. Transitions followed by catalytic activity and spectroscopic properties are monophasic and superimposable, indicating that ZmTIM unfolds/refolds in a two-state behavior with an unfolding DeltaG degrees (H20)=99.8+/-5.3kJmol(-1). This contrasts with most other studied TIMs, where folding intermediates are common. The three-dimensional structure of ZmTIM was solved at 1.8A. A structural comparison with other eukaryotic TIMs shows a similar number of intramolecular and intermolecular interactions. Interestingly the number of interfacial water molecules found in ZmTIM is lower than those observed in most TIMs that show folding intermediates. Although with the available data, there is no clear correlation between structural properties and the number of equilibrium intermediates in the unfolding of TIM, the identification of such structural properties should increase our understanding of folding mechanisms.

-	~~Authors:~~ Romero-Romero, S., ~~Fernandez~~-~~Velasco~~, ~~D.A.~~, Rodriguez-Romero, A.	+	Structure and conformational stability of the triosephosphate isomerase from Zea mays. Comparison with the chemical unfolding pathways of other eukaryotic TIMs.,Romero-Romero S, Becerril-Sesin LA, Costas M, Rodriguez-Romero A, Fernandez-Velasco DA Arch Biochem Biophys. 2018 Sep 24;658:66-76. doi: 10.1016/j.abb.2018.09.022. PMID:30261166<ref>PMID:30261166</ref>

-	~~Description: Crystal structure~~ of ~~Triosephosphate Isomerase from Zea mays (mexican corn)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: Fernandez-Velasco, D.A]]	+	<div class="pdbe-citations 6cg9" style="background-color:#fffaf0;"></div>
-	~~[[Category: Romero-Romero, S~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Triose-phosphate isomerase]]
		+	[[Category: Fernandez-Velasco, D A]]
	[[Category: Rodriguez-Romero, A]]		[[Category: Rodriguez-Romero, A]]
		+	[[Category: Romero-Romero, S]]
		+	[[Category: Glycolysis]]
		+	[[Category: Isomerase]]
		+	[[Category: Tim-barrel]]

OCA: Protected "6cg9" [edit=sysop:move=sysop]

OCA — Wed, 28 Feb 2018 05:03:05 GMT

Protected "6cg9" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:03, 28 February 2018

OCA: New page: '''Unreleased structure''' The entry 6cg9 is ON HOLD until Paper Publication Authors: Romero-Romero, S., Fernandez-Velasco, D.A., Rodriguez-Romero, A. Description: Crystal structure of...

OCA — Wed, 28 Feb 2018 05:03:04 GMT

New page: '''Unreleased structure''' The entry 6cg9 is ON HOLD until Paper Publication Authors: Romero-Romero, S., Fernandez-Velasco, D.A., Rodriguez-Romero, A. Description: Crystal structure of...

New page

'''Unreleased structure'''

The entry 6cg9 is ON HOLD until Paper Publication

Authors: Romero-Romero, S., Fernandez-Velasco, D.A., Rodriguez-Romero, A.

Description: Crystal structure of Triosephosphate Isomerase from Zea mays (mexican corn)
[[Category: Unreleased Structures]]
[[Category: Fernandez-Velasco, D.A]]
[[Category: Romero-Romero, S]]
[[Category: Rodriguez-Romero, A]]