6ctd - Revision history

OCA at 14:30, 13 March 2024

OCA — Wed, 13 Mar 2024 14:30:29 GMT

←Older revision		Revision as of 14:30, 13 March 2024
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	<StructureSection load='6ctd' size='340' side='right'caption='[[6ctd]], [[Resolution\|resolution]] 5.80Å' scene=''>		<StructureSection load='6ctd' size='340' side='right'caption='[[6ctd]], [[Resolution\|resolution]] 5.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ctd]] is a 10 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Mycta Mycta~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CTD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6CTD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ctd]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Ra Mycobacterium tuberculosis H37Ra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CTD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CTD FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=AU:GOLD+ION'>AU</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 5.8Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~mscL, MRA_0992 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=419947 MYCTA])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AU:GOLD+ION'>AU</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6ctd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ctd OCA], [~~http~~://pdbe.org/6ctd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6ctd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6ctd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6ctd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ctd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ctd OCA], [https://pdbe.org/6ctd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ctd RCSB], [https://www.ebi.ac.uk/pdbsum/6ctd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ctd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~MSCL_MYCTA MSCL_MYCTA]~~] Channel that opens in response to stretch forces in the membrane lipid bilayer~~. The force required to trigger channel opening depends on the nature of the membrane lipids; the presence of phosphatidylinositol enhances mechanosensitivity of the channel~~. May participate in the regulation of osmotic pressure changes within the cell~~.[UniProtKB:P9WJN5]~~	+	[https://www.uniprot.org/uniprot/MSCL_MYCTU MSCL_MYCTU] Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell (By similarity).
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	~~Microbial survival in dynamic environments requires the ability to successfully respond to abrupt changes in osmolarity. The mechanosensitive channel of large conductance~~ (~~MscL~~) is a ubiquitous channel that facilitates the survival of bacteria and archaea under severe osmotic downshock conditions by relieving excess turgor pressure in response to increased membrane tension. A prominent structural feature of MscL, the cytoplasmic C-terminal domain, has been suggested to influence channel assembly and function. In this report, we describe the X-ray crystal structure and electrophysiological properties of a C-terminal domain truncation of the Mycobacterium tuberculosis MscL (MtMscLDeltaC). A crystal structure of MtMscLDeltaC solubilized in the detergent n-dodecyl-beta-D-maltopyranoside reveals the pentameric, closed state-like architecture for the membrane spanning region observed in the previously solved full-length MtMscL. Electrophysiological characterization demonstrates that MtMscLDeltaC retains mechanosensitivity, but with conductance and tension sensitivity more closely resembling full length EcMscL than MtMscL. This study establishes that the C-terminal domain of MtMscL is not required for oligomerization of the full-length channel, but rather influences the tension sensitivity and conductance properties of the channel. The collective picture that emerges from these data is that each MscL channel structure has characteristic features, highlighting the importance of studying multiple homologs.	+

-	Elucidating a role for the cytoplasmic domain in the Mycobacterium tuberculosis mechanosensitive channel of large conductance.,Herrera N, Maksaev G, Haswell ES, Rees DC Sci Rep. 2018 Oct 1;8(1):14566. doi: 10.1038/s41598-018-32536-6. PMID:30275500<ref>PMID:30275500</ref>	+	==See Also==
-		+	*[[Ion channels 3D structures\|Ion channels 3D structures]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 6ctd" style="background-color:#fffaf0;"></div>~~	+
-	== ~~References~~ ==	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mycta~~]]	+	[[Category: Mycobacterium tuberculosis H37Ra]]
-	[[Category: Herrera, N]]	+	[[Category: Herrera N]]
-	[[Category: Rees~~, D C]]~~	+	[[Category: Rees DC]]
-	~~[[Category: Channel mechanosensitive mycobacterium tuberculosis]]~~	+
-	~~[[Category: Membrane protein~~]]	+

OCA at 17:17, 20 November 2019

OCA — Wed, 20 Nov 2019 17:17:03 GMT

←Older revision		Revision as of 17:17, 20 November 2019
Line 1:		Line 1:

	==C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Channel of Large Conductance MscL==		==C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Channel of Large Conductance MscL==
-	<StructureSection load='6ctd' size='340' side='right' caption='[[6ctd]], [[Resolution\|resolution]] 5.80Å' scene=''>	+	<StructureSection load='6ctd' size='340' side='right'caption='[[6ctd]], [[Resolution\|resolution]] 5.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ctd]] is a 10 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CTD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CTD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ctd]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycta Mycta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CTD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CTD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AU:GOLD+ION'>AU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AU:GOLD+ION'>AU</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mscL, MRA_0992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=419947 MYCTA])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ctd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ctd OCA], [http://pdbe.org/6ctd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ctd RCSB], [http://www.ebi.ac.uk/pdbsum/6ctd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ctd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ctd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ctd OCA], [http://pdbe.org/6ctd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ctd RCSB], [http://www.ebi.ac.uk/pdbsum/6ctd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ctd ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Mycta]]
	[[Category: Herrera, N]]		[[Category: Herrera, N]]
	[[Category: Rees, D C]]		[[Category: Rees, D C]]
	[[Category: Channel mechanosensitive mycobacterium tuberculosis]]		[[Category: Channel mechanosensitive mycobacterium tuberculosis]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]

OCA at 08:05, 10 October 2018

OCA — Wed, 10 Oct 2018 08:05:14 GMT

←Older revision		Revision as of 08:05, 10 October 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6ctd is ~~ON HOLD until Paper~~ Publication	+	==C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Channel of Large Conductance MscL==
		+	<StructureSection load='6ctd' size='340' side='right' caption='[[6ctd]], [[Resolution\|resolution]] 5.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6ctd]] is a 10 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CTD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CTD FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AU:GOLD+ION'>AU</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ctd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ctd OCA], [http://pdbe.org/6ctd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ctd RCSB], [http://www.ebi.ac.uk/pdbsum/6ctd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ctd ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MSCL_MYCTA MSCL_MYCTA]] Channel that opens in response to stretch forces in the membrane lipid bilayer. The force required to trigger channel opening depends on the nature of the membrane lipids; the presence of phosphatidylinositol enhances mechanosensitivity of the channel. May participate in the regulation of osmotic pressure changes within the cell.[UniProtKB:P9WJN5]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Microbial survival in dynamic environments requires the ability to successfully respond to abrupt changes in osmolarity. The mechanosensitive channel of large conductance (MscL) is a ubiquitous channel that facilitates the survival of bacteria and archaea under severe osmotic downshock conditions by relieving excess turgor pressure in response to increased membrane tension. A prominent structural feature of MscL, the cytoplasmic C-terminal domain, has been suggested to influence channel assembly and function. In this report, we describe the X-ray crystal structure and electrophysiological properties of a C-terminal domain truncation of the Mycobacterium tuberculosis MscL (MtMscLDeltaC). A crystal structure of MtMscLDeltaC solubilized in the detergent n-dodecyl-beta-D-maltopyranoside reveals the pentameric, closed state-like architecture for the membrane spanning region observed in the previously solved full-length MtMscL. Electrophysiological characterization demonstrates that MtMscLDeltaC retains mechanosensitivity, but with conductance and tension sensitivity more closely resembling full length EcMscL than MtMscL. This study establishes that the C-terminal domain of MtMscL is not required for oligomerization of the full-length channel, but rather influences the tension sensitivity and conductance properties of the channel. The collective picture that emerges from these data is that each MscL channel structure has characteristic features, highlighting the importance of studying multiple homologs.

-	~~Authors: Herrera~~, N., ~~Rees~~, D.C.	+	Elucidating a role for the cytoplasmic domain in the Mycobacterium tuberculosis mechanosensitive channel of large conductance.,Herrera N, Maksaev G, Haswell ES, Rees DC Sci Rep. 2018 Oct 1;8(1):14566. doi: 10.1038/s41598-018-32536-6. PMID:30275500<ref>PMID:30275500</ref>

-	~~Description: C-terminal domain truncation~~ of the ~~Mycobacterium tuberculosis Mechanosensitive Channel~~ of ~~Large Conductance MscL~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Rees, D.C]]~~	+	<div class="pdbe-citations 6ctd" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Herrera, N]]		[[Category: Herrera, N]]
		+	[[Category: Rees, D C]]
		+	[[Category: Channel mechanosensitive mycobacterium tuberculosis]]
		+	[[Category: Membrane protein]]

OCA at 05:19, 18 July 2018

OCA — Wed, 18 Jul 2018 05:19:14 GMT

←Older revision		Revision as of 05:19, 18 July 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ctd is ON HOLD	+	The entry 6ctd is ON HOLD until Paper Publication

	Authors: Herrera, N., Rees, D.C.		Authors: Herrera, N., Rees, D.C.

OCA at 04:00, 11 July 2018

OCA — Wed, 11 Jul 2018 04:00:04 GMT

←Older revision		Revision as of 04:00, 11 July 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ctd is ON HOLD ~~until Paper Publication~~	+	The entry 6ctd is ON HOLD

	Authors: Herrera, N., Rees, D.C.		Authors: Herrera, N., Rees, D.C.

OCA at 04:01, 25 April 2018

OCA — Wed, 25 Apr 2018 04:01:36 GMT

←Older revision		Revision as of 04:01, 25 April 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ctd is ON HOLD	+	The entry 6ctd is ON HOLD until Paper Publication

	Authors: Herrera, N., Rees, D.C.		Authors: Herrera, N., Rees, D.C.

OCA: Protected "6ctd" [edit=sysop:move=sysop]

OCA — Wed, 28 Mar 2018 05:23:30 GMT

Protected "6ctd" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:23, 28 March 2018

OCA: New page: '''Unreleased structure''' The entry 6ctd is ON HOLD Authors: Herrera, N., Rees, D.C. Description: C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Chann...

OCA — Wed, 28 Mar 2018 05:23:29 GMT

New page: '''Unreleased structure''' The entry 6ctd is ON HOLD Authors: Herrera, N., Rees, D.C. Description: C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Chann...

New page

'''Unreleased structure'''

The entry 6ctd is ON HOLD

Authors: Herrera, N., Rees, D.C.

Description: C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Channel of Large Conductance MscL
[[Category: Unreleased Structures]]
[[Category: Rees, D.C]]
[[Category: Herrera, N]]