6dnz - Revision history

OCA at 12:53, 25 December 2019

OCA — Wed, 25 Dec 2019 12:53:56 GMT

←Older revision		Revision as of 12:53, 25 December 2019
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnz OCA], [http://pdbe.org/6dnz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dnz RCSB], [http://www.ebi.ac.uk/pdbsum/6dnz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnz OCA], [http://pdbe.org/6dnz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dnz RCSB], [http://www.ebi.ac.uk/pdbsum/6dnz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnz ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Prozymes are pseudoenzymes that stimulate the function of weakly active enzymes through complex formation. The major Trypanosoma brucei protein arginine methyltransferase, TbPRMT1 enzyme (ENZ), requires TbPRMT1 prozyme (PRO) to form an active heterotetrameric complex. Here, we present the X-ray crystal structure of the TbPRMT1 ENZ-Delta52PRO tetrameric complex with the cofactor product S-adenosyl-l-homocysteine (AdoHcy) at 2.4 A resolution. The individual ENZ and PRO units adopt the highly-conserved PRMT domain architecture and form an antiparallel heterodimer that corresponds to the canonical homodimer observed in all previously reported PRMTs. In turn, two such heterodimers assemble into a tetramer both in the crystal and in solution with twofold rotational symmetry. ENZ is unstable in absence of PRO and incapable of forming a homodimer due to a steric clash of an ENZ-specific tyrosine within the dimerization arm, rationalizing why PRO is required to complement ENZ to form a PRMT dimer that is necessary, but not sufficient for PRMT activity. The PRO structure deviates from other, active PRMTs in that it lacks the conserved eta2 310-helix within the Rossmann fold, abolishing cofactor binding. In addition to its chaperone function for ENZ, PRO substantially contributes to substrate binding. Heterotetramerization is required for catalysis, as heterodimeric ENZ-PRO mutants lack binding affinity and methyltransferase activity toward the substrate protein TbRGG1. Together, we provide a structural basis for TbPRMT1 ENZ activation by PRO heterotetramer formation, which is conserved across all kinetoplastids, and describe a chaperone function of the TbPRMT1 prozyme, which represents a novel mode of PRMT regulation.
		+
		+	Structural Basis of Protein Arginine Methyltransferase Activation by a Catalytically Dead Homolog (Prozyme).,Hashimoto H, Kafkova L, Raczkowski A, Jordan KD, Read LK, Debler EW J Mol Biol. 2019 Nov 11. pii: S0022-2836(19)30658-8. doi:, 10.1016/j.jmb.2019.11.002. PMID:31726063<ref>PMID:31726063</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6dnz" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 10:13, 18 December 2019

OCA — Wed, 18 Dec 2019 10:13:44 GMT

←Older revision		Revision as of 10:13, 18 December 2019
Line 3:		Line 3:
	<StructureSection load='6dnz' size='340' side='right'caption='[[6dnz]], [[Resolution\|resolution]] 2.38Å' scene=''>		<StructureSection load='6dnz' size='340' side='right'caption='[[6dnz]], [[Resolution\|resolution]] 2.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6dnz]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DNZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DNZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6dnz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tryb2 Tryb2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DNZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DNZ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TB927.1.4690 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=185431 TRYB2]), Tb10.70.3860 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=185431 TRYB2])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnz OCA], [http://pdbe.org/6dnz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dnz RCSB], [http://www.ebi.ac.uk/pdbsum/6dnz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnz OCA], [http://pdbe.org/6dnz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dnz RCSB], [http://www.ebi.ac.uk/pdbsum/6dnz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnz ProSAT]</span></td></tr>
	</table>		</table>
Line 11:		Line 12:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Tryb2]]
	[[Category: Debler, E W]]		[[Category: Debler, E W]]
	[[Category: Hashimoto, H]]		[[Category: Hashimoto, H]]

OCA at 05:30, 12 June 2019

OCA — Wed, 12 Jun 2019 05:30:01 GMT

←Older revision		Revision as of 05:30, 12 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6dnz ~~is ON HOLD until Paper Publication~~	+	==Trypanosoma brucei PRMT1 enzyme-prozyme heterotetrameric complex with AdoHcy==
-		+	<StructureSection load='6dnz' size='340' side='right'caption='[[6dnz]], [[Resolution\|resolution]] 2.38Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6dnz]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DNZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DNZ FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnz OCA], [http://pdbe.org/6dnz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dnz RCSB], [http://www.ebi.ac.uk/pdbsum/6dnz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnz ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Debler, E W]]
		+	[[Category: Hashimoto, H]]
		+	[[Category: Jordan, K]]
		+	[[Category: Kafkova, L]]
		+	[[Category: Read, L K]]
		+	[[Category: Gene regulation]]
		+	[[Category: Prmt1]]
		+	[[Category: Protein arginine methyltransferase]]
		+	[[Category: Prozyme]]
		+	[[Category: Teterameric complex]]

OCA at 05:39, 4 July 2018

OCA — Wed, 04 Jul 2018 05:39:15 GMT

←Older revision		Revision as of 05:39, 4 July 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6dnz is ON HOLD	+	The entry 6dnz is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6dnz" [edit=sysop:move=sysop]

OCA — Wed, 20 Jun 2018 04:01:52 GMT

Protected "6dnz" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:01, 20 June 2018

OCA: New page: '''Unreleased structure''' The entry 6dnz is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 20 Jun 2018 04:01:51 GMT

New page: '''Unreleased structure''' The entry 6dnz is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6dnz is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]