6dwe - Revision history

OCA at 06:14, 11 October 2023

OCA — Wed, 11 Oct 2023 06:14:48 GMT

←Older revision		Revision as of 06:14, 11 October 2023
Line 3:		Line 3:
	<StructureSection load='6dwe' size='340' side='right'caption='[[6dwe]], [[Resolution\|resolution]] 2.69Å' scene=''>		<StructureSection load='6dwe' size='340' side='right'caption='[[6dwe]], [[Resolution\|resolution]] 2.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6dwe]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Myctu Myctu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6DWE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6dwe]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DWE FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=HDJ:(2R,3S,4R)-3-(2,6-difluoro-4-methyl[1,1-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile'>HDJ</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=P1T:2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC+ACID'>P1T</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.691Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trpA, Rv1613, MTCY01B2.05 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU]), trpB, Rv1612, MTCY01B2.04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=HDJ:(2R,3S,4R)-3-(2,6-difluoro-4-methyl[1,1-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile'>HDJ</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=P1T:2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC+ACID'>P1T</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dwe OCA], [https://pdbe.org/6dwe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dwe RCSB], [https://www.ebi.ac.uk/pdbsum/6dwe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dwe ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6dwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dwe OCA], [~~http~~://pdbe.org/6dwe PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6dwe RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6dwe PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6dwe ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/TRPA_MYCTU TRPA_MYCTU]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate~~. [[http://www.uniprot.org/uniprot/TRPB_MYCTU TRPB_MYCTU]] The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine (By similarity)~~.	+	[https://www.uniprot.org/uniprot/TRPA_MYCTU TRPA_MYCTU] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.

	==See Also==		==See Also==
-	*[[Tryptophan synthase\|Tryptophan synthase]]	+	*[[Tryptophan synthase 3D structures\|Tryptophan synthase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Myctu]]~~	+	[[Category: Mycobacterium tuberculosis H37Rv]]
-	~~[[Category: Tryptophan synthase]]~~	+	[[Category: Chang C]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Jedrzejczak R]]
-	[[Category: Chang, C]]	+	[[Category: Joachimiak A]]
-	[[Category: Jedrzejczak, R]]	+	[[Category: Maltseva NI]]
-	[[Category: Joachimiak, A]]	+	[[Category: McCarren P]]
-	[[Category: Maltseva~~, N I~~]]	+	[[Category: Michalska K]]
-	[[Category: McCarren, P]]	+	[[Category: Nag PP]]
-	[[Category: Michalska, K]]	+	[[Category: Satchell K]]
-	[[Category: Nag~~, P P~~]]	+
-	[[Category: Satchell, K]]	+
-	~~[[Category: Allostery]]~~	+
-	~~[[Category: Amino acid biosynthesis]]~~	+
-	~~[[Category: Csgid]]~~	+
-	~~[[Category: Heterotetramer]]~~	+
-	~~[[Category: Lyase-lyase inhibitor complex]]~~	+
-	~~[[Category: Plp]]~~	+
-	~~[[Category: Substrate channeling~~]]	+

OCA at 06:46, 17 April 2019

OCA — Wed, 17 Apr 2019 06:46:12 GMT

←Older revision		Revision as of 06:46, 17 April 2019
Line 1:		Line 1:

	==Crystal structure of tryptophan synthase from M. tuberculosis - aminoacrylate- and BRD0059-bound form==		==Crystal structure of tryptophan synthase from M. tuberculosis - aminoacrylate- and BRD0059-bound form==
-	<StructureSection load='6dwe' size='340' side='right' caption='[[6dwe]], [[Resolution\|resolution]] 2.69Å' scene=''>	+	<StructureSection load='6dwe' size='340' side='right'caption='[[6dwe]], [[Resolution\|resolution]] 2.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6dwe]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DWE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6dwe]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DWE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=HDJ:(2R,3S,4R)-3-(2,6-difluoro-4-methyl[1,1-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile'>HDJ</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=P1T:2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC+ACID'>P1T</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=HDJ:(2R,3S,4R)-3-(2,6-difluoro-4-methyl[1,1-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile'>HDJ</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=P1T:2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC+ACID'>P1T</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trpA, Rv1613, MTCY01B2.05 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU]), trpB, Rv1612, MTCY01B2.04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dwe OCA], [http://pdbe.org/6dwe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dwe RCSB], [http://www.ebi.ac.uk/pdbsum/6dwe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dwe ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dwe OCA], [http://pdbe.org/6dwe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dwe RCSB], [http://www.ebi.ac.uk/pdbsum/6dwe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dwe ProSAT]</span></td></tr>
Line 10:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/TRPA_MYCTU TRPA_MYCTU]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. [[http://www.uniprot.org/uniprot/TRPB_MYCTU TRPB_MYCTU]] The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine (By similarity).		[[http://www.uniprot.org/uniprot/TRPA_MYCTU TRPA_MYCTU]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. [[http://www.uniprot.org/uniprot/TRPB_MYCTU TRPB_MYCTU]] The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine (By similarity).
		+
		+	==See Also==
		+	*[[Tryptophan synthase\|Tryptophan synthase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Myctu]]
	[[Category: Tryptophan synthase]]		[[Category: Tryptophan synthase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 05:45, 11 July 2018

OCA — Wed, 11 Jul 2018 05:45:29 GMT

←Older revision		Revision as of 05:45, 11 July 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6dwe ~~is ON HOLD~~	+	==Crystal structure of tryptophan synthase from M. tuberculosis - aminoacrylate- and BRD0059-bound form==
-		+	<StructureSection load='6dwe' size='340' side='right' caption='[[6dwe]], [[Resolution\|resolution]] 2.69Å' scene=''>
-	~~Authors~~: ~~Chang, C~~., ~~Michalska~~, K., ~~Maltseva~~, ~~N.I.~~, ~~Jedrzejczak~~, R., ~~McCarren~~, P., ~~Nag~~, P.P., ~~Joachimiak~~, A., ~~Satchell~~, K., ~~Center for Structural Genomics of Infectious Diseases (CSGID)~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6dwe]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DWE FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure~~ of ~~tryptophan synthase from M~~. ~~tuberculosis -aminoacrylate~~-and ~~BRD0059~~-~~bound form~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=HDJ:(2R,3S,4R)-3-(2,6-difluoro-4-methyl[1,1-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile'>HDJ</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=P1T:2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC+ACID'>P1T</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dwe OCA], [http://pdbe.org/6dwe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dwe RCSB], [http://www.ebi.ac.uk/pdbsum/6dwe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dwe ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TRPA_MYCTU TRPA_MYCTU]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. [[http://www.uniprot.org/uniprot/TRPB_MYCTU TRPB_MYCTU]] The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine (By similarity).
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Tryptophan synthase]]
		+	[[Category: Structural genomic]]
		+	[[Category: Chang, C]]
		+	[[Category: Jedrzejczak, R]]
		+	[[Category: Joachimiak, A]]
		+	[[Category: Maltseva, N I]]
		+	[[Category: McCarren, P]]
	[[Category: Michalska, K]]		[[Category: Michalska, K]]
-	[[Category: ~~Mccarren~~, P]]	+	[[Category: Nag, P P]]
-	~~[[Category: Joachimiak, A]]~~	+
-	~~[[Category: Maltseva, N.I~~]]	+
	[[Category: Satchell, K]]		[[Category: Satchell, K]]
-	[[Category: ~~Jedrzejczak, R~~]]	+	[[Category: Allostery]]
-	[[Category: ~~Center For Structural Genomics Of Infectious Diseases (~~Csgid)]]	+	[[Category: Amino acid biosynthesis]]
-	[[Category: ~~Chang, C~~]]	+	[[Category: Csgid]]
-	[[Category: ~~Nag, P.P~~]]	+	[[Category: Heterotetramer]]
		+	[[Category: Lyase-lyase inhibitor complex]]
		+	[[Category: Plp]]
		+	[[Category: Substrate channeling]]

OCA: Protected "6dwe" [edit=sysop:move=sysop]

OCA — Wed, 04 Jul 2018 05:47:37 GMT

Protected "6dwe" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:47, 4 July 2018

OCA: New page: '''Unreleased structure''' The entry 6dwe is ON HOLD Authors: Chang, C., Michalska, K., Maltseva, N.I., Jedrzejczak, R., McCarren, P., Nag, P.P., Joachimiak, A., Satchell, K., Center fo...

OCA — Wed, 04 Jul 2018 05:47:36 GMT

New page: '''Unreleased structure''' The entry 6dwe is ON HOLD Authors: Chang, C., Michalska, K., Maltseva, N.I., Jedrzejczak, R., McCarren, P., Nag, P.P., Joachimiak, A., Satchell, K., Center fo...

New page

'''Unreleased structure'''

The entry 6dwe is ON HOLD

Authors: Chang, C., Michalska, K., Maltseva, N.I., Jedrzejczak, R., McCarren, P., Nag, P.P., Joachimiak, A., Satchell, K., Center for Structural Genomics of Infectious Diseases (CSGID)

Description: Crystal structure of tryptophan synthase from M. tuberculosis -aminoacrylate-and BRD0059-bound form
[[Category: Unreleased Structures]]
[[Category: Michalska, K]]
[[Category: Mccarren, P]]
[[Category: Joachimiak, A]]
[[Category: Maltseva, N.I]]
[[Category: Satchell, K]]
[[Category: Jedrzejczak, R]]
[[Category: Center For Structural Genomics Of Infectious Diseases (Csgid)]]
[[Category: Chang, C]]
[[Category: Nag, P.P]]