6ekp - Revision history

OCA at 06:58, 7 April 2021

OCA — Wed, 07 Apr 2021 06:58:46 GMT

←Older revision		Revision as of 06:58, 7 April 2021
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	<StructureSection load='6ekp' size='340' side='right'caption='[[6ekp]], [[Resolution\|resolution]] 1.46Å' scene=''>		<StructureSection load='6ekp' size='340' side='right'caption='[[6ekp]], [[Resolution\|resolution]] 1.46Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ekp]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EKP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6EKP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ekp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6EKP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=P3G:3,6,9,12,15-PENTAOXAHEPTADECANE'>P3G</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=P3G:3,6,9,12,15-PENTAOXAHEPTADECANE'>P3G</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ejw\|6ejw]], [[6ejz\|6ejz]], [[6eni\|6eni]], [[6enn\|6enn]], [[6elb\|6elb]], [[6elf\|6elf]], [[6elg\|6elg]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6ejw\|6ejw]], [[6ejz\|6ejz]], [[6eni\|6eni]], [[6enn\|6enn]], [[6elb\|6elb]], [[6elf\|6elf]], [[6elg\|6elg]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6ekp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ekp OCA], [~~http~~://pdbe.org/6ekp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6ekp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6ekp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6ekp ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trpR, rtrY, b4393, JW4356 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ekp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ekp OCA], [https://pdbe.org/6ekp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ekp RCSB], [https://www.ebi.ac.uk/pdbsum/6ekp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ekp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/TRPR_ECOLI TRPR_ECOLI]] This protein is an aporepressor. When complexed with L-tryptophan it binds the operator region of the trp operon (5'-ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.	+	[[https://www.uniprot.org/uniprot/TRPR_ECOLI TRPR_ECOLI]] This protein is an aporepressor. When complexed with L-tryptophan it binds the operator region of the trp operon (5'-ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ecoli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Herud-Sikimic, O]]		[[Category: Herud-Sikimic, O]]

OCA at 09:11, 11 November 2020

OCA — Wed, 11 Nov 2020 09:11:57 GMT

←Older revision		Revision as of 09:11, 11 November 2020
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	==Tryptophan Repressor TrpR from E.coli variant T44L T81M S88Y with Indole-3-acetic acid as ligand==		==Tryptophan Repressor TrpR from E.coli variant T44L T81M S88Y with Indole-3-acetic acid as ligand==
-	<StructureSection load='6ekp' size='340' side='right' caption='[[6ekp]], [[Resolution\|resolution]] 1.46Å' scene=''>	+	<StructureSection load='6ekp' size='340' side='right'caption='[[6ekp]], [[Resolution\|resolution]] 1.46Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ekp]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EKP OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6EKP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ekp]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EKP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6EKP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=P3G:3,6,9,12,15-PENTAOXAHEPTADECANE'>P3G</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=P3G:3,6,9,12,15-PENTAOXAHEPTADECANE'>P3G</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ejw\|6ejw]], [[6ejz\|6ejz]], [[6eni\|6eni]], [[6enn\|6enn]], [[6elb\|6elb]], [[6elf\|6elf]], [[6elg\|6elg]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ejw\|6ejw]], [[6ejz\|6ejz]], [[6eni\|6eni]], [[6enn\|6enn]], [[6elb\|6elb]], [[6elf\|6elf]], [[6elg\|6elg]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6ekp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ekp OCA], [http://pdbe.org/6ekp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ekp RCSB], [http://www.ebi.ac.uk/pdbsum/6ekp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ekp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ekp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ekp OCA], [http://pdbe.org/6ekp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ekp RCSB], [http://www.ebi.ac.uk/pdbsum/6ekp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ekp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Herud-Sikimic, O]]		[[Category: Herud-Sikimic, O]]
	[[Category: Hocker, B]]		[[Category: Hocker, B]]

OCA at 08:17, 30 January 2019

OCA — Wed, 30 Jan 2019 08:17:27 GMT

←Older revision		Revision as of 08:17, 30 January 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6ekp ~~is ON HOLD until Paper Publication~~	+	==Tryptophan Repressor TrpR from E.coli variant T44L T81M S88Y with Indole-3-acetic acid as ligand==
-		+	<StructureSection load='6ekp' size='340' side='right' caption='[[6ekp]], [[Resolution\|resolution]] 1.46Å' scene=''>
-	~~Authors~~: ~~Stiel, A~~.C., ~~Shanmugaratnam~~, S., ~~Herud~~-~~Sikimic~~, O., ~~Juergens~~, G., ~~Hocker~~, B.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6ekp]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EKP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EKP FirstGlance]. <br>
-	~~Description~~: ~~Tryptophan Repressor TrpR from E~~.~~coli variant T44L T81M S88Y~~ with ~~Indole~~-3-~~acetic acid as ligand~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=P3G:3,6,9,12,15-PENTAOXAHEPTADECANE'>P3G</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ejw\|6ejw]], [[6ejz\|6ejz]], [[6eni\|6eni]], [[6enn\|6enn]], [[6elb\|6elb]], [[6elf\|6elf]], [[6elg\|6elg]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ekp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ekp OCA], [http://pdbe.org/6ekp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ekp RCSB], [http://www.ebi.ac.uk/pdbsum/6ekp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ekp ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TRPR_ECOLI TRPR_ECOLI]] This protein is an aporepressor. When complexed with L-tryptophan it binds the operator region of the trp operon (5'-ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Herud-Sikimic, O]]
	[[Category: Hocker, B]]		[[Category: Hocker, B]]
		+	[[Category: Juergens, G]]
	[[Category: Shanmugaratnam, S]]		[[Category: Shanmugaratnam, S]]
-	[[Category: ~~Herud-Sikimic~~, O]]	+	[[Category: Stiel, A C]]
-	[[Category: ~~Stiel, A.C~~]]	+	[[Category: Ligand binding]]
-	[[Category: ~~Juergens, G~~]]	+	[[Category: Transcription]]

OCA at 05:40, 11 October 2017

OCA — Wed, 11 Oct 2017 05:40:48 GMT

←Older revision		Revision as of 05:40, 11 October 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ekp is ON HOLD	+	The entry 6ekp is ON HOLD until Paper Publication

	Authors: Stiel, A.C., Shanmugaratnam, S., Herud-Sikimic, O., Juergens, G., Hocker, B.		Authors: Stiel, A.C., Shanmugaratnam, S., Herud-Sikimic, O., Juergens, G., Hocker, B.
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Hocker, B]]		[[Category: Hocker, B]]
-	[[Category: Herud-Sikimic, O]]
	[[Category: Shanmugaratnam, S]]		[[Category: Shanmugaratnam, S]]
		+	[[Category: Herud-Sikimic, O]]
	[[Category: Stiel, A.C]]		[[Category: Stiel, A.C]]
	[[Category: Juergens, G]]		[[Category: Juergens, G]]

OCA: Protected "6ekp" [edit=sysop:move=sysop]

OCA — Wed, 04 Oct 2017 08:19:17 GMT

Protected "6ekp" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:19, 4 October 2017

OCA: New page: '''Unreleased structure''' The entry 6ekp is ON HOLD Authors: Stiel, A.C., Shanmugaratnam, S., Herud-Sikimic, O., Juergens, G., Hocker, B. Description: Tryptophan Repressor TrpR from E...

OCA — Wed, 04 Oct 2017 08:19:16 GMT

New page: '''Unreleased structure''' The entry 6ekp is ON HOLD Authors: Stiel, A.C., Shanmugaratnam, S., Herud-Sikimic, O., Juergens, G., Hocker, B. Description: Tryptophan Repressor TrpR from E...

New page

'''Unreleased structure'''

The entry 6ekp is ON HOLD

Authors: Stiel, A.C., Shanmugaratnam, S., Herud-Sikimic, O., Juergens, G., Hocker, B.

Description: Tryptophan Repressor TrpR from E.coli variant T44L T81M S88Y with Indole-3-acetic acid as ligand
[[Category: Unreleased Structures]]
[[Category: Hocker, B]]
[[Category: Herud-Sikimic, O]]
[[Category: Shanmugaratnam, S]]
[[Category: Stiel, A.C]]
[[Category: Juergens, G]]