OCA at 20:29, 2 December 2018

OCA — Sun, 02 Dec 2018 20:29:32 GMT

←Older revision		Revision as of 20:29, 2 December 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 6exu is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Crystal structure of the DNA binding domain of fission yeast Sap1==
		+	<StructureSection load='6exu' size='340' side='right' caption='[[6exu]], [[Resolution\|resolution]] 1.41Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6exu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fission_yeast Fission yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EXU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EXU FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAS:S-(DIMETHYLARSENIC)CYSTEINE'>CAS</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ext\|6ext]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sap1, SPCC1672.02c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284812 Fission yeast])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6exu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6exu OCA], [http://pdbe.org/6exu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6exu RCSB], [http://www.ebi.ac.uk/pdbsum/6exu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6exu ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SAP1_SCHPO SAP1_SCHPO]] Binds to sequences required for mating-type switching. Makes a simultaneous contact with both the alpha and beta domains of the switch-activating site SAS1. Also binds to replication fork barrier 1 (RFB1) located within a 78 base pair sequence near the 3' end of the rRNA coding region. This leads to replication fork blockage. It binds the consensus sequence 5'-TA[AG]GCAGNTN[CT]AACG[AC]G-3'. Has a role in chromosome organization and integrity where it is involved in chromosome segregation. Has a role in sister chromatid cohesion and condensation.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The mechanism by which specific protein-DNA complexes induce programmed replication fork stalling in the eukaryotic genome remains poorly understood. In order to shed light on this process we carried out structural investigations on the essential fission yeast protein Sap1. Sap1 was identified as a protein involved in mating-type switching in Schizosaccharomyces pombe, and has been shown to be involved in programmed replication fork stalling. Interestingly, Sap1 assumes two different DNA binding modes. At the mating-type locus dimers of Sap1 bind the SAS1 sequence in a head-to-head arrangement, while they bind to replication fork blocking sites at rDNA and Tf2 transposons in a head-to-tail mode. In this study, we have solved the crystal structure of the Sap1 DNA binding domain and we observe that Sap1 molecules interact in the crystal using a head-to-tail arrangement that is compatible with DNA binding. We find that Sap1 mutations which alleviate replication-fork blockage at Tf2 transposons in CENP-B mutants map to the head-to-tail interface. Furthermore, several other mutations introduced in this interface are found to be lethal. Our data suggests that essential functions of Sap1 depend on its head-to-tail oligomerization.

-	~~Authors: Ekundayo, B~~., ~~Joergensen~~, M., ~~Schalch~~, T.	+	Structure of the replication regulator Sap1 reveals functionally important interfaces.,Jorgensen MM, Ekundayo B, Zaratiegui M, Skriver K, Thon G, Schalch T Sci Rep. 2018 Jul 19;8(1):10930. doi: 10.1038/s41598-018-29198-9. PMID:30026545<ref>PMID:30026545</ref>

-	~~Description: Crystal structure~~ of the ~~DNA binding domain~~ of ~~fission yeast Sap1~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: ~~Schalch, T~~]]	+	<div class="pdbe-citations 6exu" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Fission yeast]]
	[[Category: Ekundayo, B]]		[[Category: Ekundayo, B]]
	[[Category: Joergensen, M]]		[[Category: Joergensen, M]]
		+	[[Category: Schalch, T]]
		+	[[Category: Dna binding protein]]
		+	[[Category: Dna replication]]
		+	[[Category: Mating type switch]]
		+	[[Category: Myb domain]]
		+	[[Category: S. pombe]]

OCA at 05:11, 29 November 2017

OCA — Wed, 29 Nov 2017 05:11:50 GMT

←Older revision		Revision as of 05:11, 29 November 2017
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	The entry 6exu is ON HOLD until Paper Publication		The entry 6exu is ON HOLD until Paper Publication

-	Authors: Ekundayo, B., ~~Schalch~~, T., ~~Joergensen~~, M.	+	Authors: Ekundayo, B., Joergensen, M., Schalch, T.

	Description: Crystal structure of the DNA binding domain of fission yeast Sap1		Description: Crystal structure of the DNA binding domain of fission yeast Sap1

OCA at 06:40, 22 November 2017

OCA — Wed, 22 Nov 2017 06:40:56 GMT

←Older revision		Revision as of 06:40, 22 November 2017
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6exu is ON HOLD	+	The entry 6exu is ON HOLD until Paper Publication

	Authors: Ekundayo, B., Schalch, T., Joergensen, M.		Authors: Ekundayo, B., Schalch, T., Joergensen, M.

OCA: Protected "6exu" [edit=sysop:move=sysop]

OCA — Wed, 15 Nov 2017 06:32:29 GMT

Protected "6exu" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:32, 15 November 2017

OCA: New page: '''Unreleased structure''' The entry 6exu is ON HOLD Authors: Ekundayo, B., Schalch, T., Joergensen, M. Description: Crystal structure of the DNA binding domain of fission yeast Sap1 [...

OCA — Wed, 15 Nov 2017 06:32:28 GMT

New page: '''Unreleased structure''' The entry 6exu is ON HOLD Authors: Ekundayo, B., Schalch, T., Joergensen, M. Description: Crystal structure of the DNA binding domain of fission yeast Sap1 [...

New page

'''Unreleased structure'''

The entry 6exu is ON HOLD

Authors: Ekundayo, B., Schalch, T., Joergensen, M.

Description: Crystal structure of the DNA binding domain of fission yeast Sap1
[[Category: Unreleased Structures]]
[[Category: Schalch, T]]
[[Category: Ekundayo, B]]
[[Category: Joergensen, M]]

6exu - Revision history

OCA at 20:29, 2 December 2018

OCA at 05:11, 29 November 2017

OCA at 06:40, 22 November 2017

OCA: Protected "6exu" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 6exu is ON HOLD Authors: Ekundayo, B., Schalch, T., Joergensen, M. Description: Crystal structure of the DNA binding domain of fission yeast Sap1 [...