6fan - Revision history

OCA at 12:26, 9 May 2024

OCA — Thu, 09 May 2024 12:26:33 GMT

←Older revision		Revision as of 12:26, 9 May 2024
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	<StructureSection load='6fan' size='340' side='right'caption='[[6fan]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='6fan' size='340' side='right'caption='[[6fan]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6fan]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Carhz Carhz~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FAN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6FAN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6fan]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans_Z-2901 Carboxydothermus hydrogenoformans Z-2901]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FAN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FAN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~>, ~~<scene name='pdbligand=MPD:(4S)-~~2~~-METHYL-2,4-PENTANEDIOL'>MPD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~CHY_0178 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=246194 CARHZ]~~)</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6fan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fan OCA], [~~http~~://pdbe.org/6fan PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6fan RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6fan PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6fan ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fan OCA], [https://pdbe.org/6fan PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fan RCSB], [https://www.ebi.ac.uk/pdbsum/6fan PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fan ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q3AFN4_CARHZ Q3AFN4_CARHZ]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Carhz~~]]	+	[[Category: Carboxydothermus hydrogenoformans Z-2901]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Alfano, M]]	+	[[Category: Alfano M]]
-	[[Category: Cavazza, C]]	+	[[Category: Cavazza C]]
-	~~[[Category: Carbon monoxide dehydrogenase]]~~	+
-	~~[[Category: Maturation pathway]]~~	+
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Nickel chaperone~~]]	+

OCA at 07:01, 27 March 2019

OCA — Wed, 27 Mar 2019 07:01:28 GMT

←Older revision		Revision as of 07:01, 27 March 2019
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	==Crystal structure of putative CooT from Carboxydothermus hydrogenoformans==		==Crystal structure of putative CooT from Carboxydothermus hydrogenoformans==
-	<StructureSection load='6fan' size='340' side='right' caption='[[6fan]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='6fan' size='340' side='right'caption='[[6fan]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6fan]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Carhz Carhz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FAN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FAN FirstGlance]. <br>		<table><tr><td colspan='2'>[[6fan]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Carhz Carhz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FAN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FAN FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Carhz]]		[[Category: Carhz]]
		+	[[Category: Large Structures]]
	[[Category: Alfano, M]]		[[Category: Alfano, M]]
	[[Category: Cavazza, C]]		[[Category: Cavazza, C]]

OCA at 20:29, 2 December 2018

OCA — Sun, 02 Dec 2018 20:29:58 GMT

←Older revision		Revision as of 20:29, 2 December 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 6fan is ~~ON HOLD~~	+	==Crystal structure of putative CooT from Carboxydothermus hydrogenoformans==
		+	<StructureSection load='6fan' size='340' side='right' caption='[[6fan]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6fan]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Carhz Carhz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FAN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FAN FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CHY_0178 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246194 CARHZ])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fan OCA], [http://pdbe.org/6fan PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fan RCSB], [http://www.ebi.ac.uk/pdbsum/6fan PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fan ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Carboxydothermus hydrogenoformans is a model microorganism for the study of [NiFe]-CODH, a key enzyme of carbon cycle in anaerobic microorganisms. The enzyme possesses a unique active site (C-cluster), constituted of a distorted [NiFe3S4] cubane linked to a mononuclear Fe(II) center. Both the biogenesis of the C-cluster and the activation of CODH by nickel insertion remain unclear. Among the three accessory proteins thought to play a role in this latter step (CooC, CooJ, and CooT), CooT is identified as a nickel chaperone involved in CODH maturation in Rhodospirillum rubrum. Here, we structurally and biophysically characterized a putative CooT protein present in C. hydrogenoformans (pChCooT). Despite the low sequence homologies between CooT from R. rubrum (RrCooT) and pChCooT (19% sequence identity), the two proteins share several similarities, such as their overall structure and a solvent-exposed Ni(II)-binding site at the dimer interface. Moreover, the X-ray structure of pChCooT reveals the proximity between the histidine 55, a potential nickel-coordinating residue, and the cysteine 2, a highly conserved key residue in Ni(II)-binding.

-	~~Authors: Cavazza, C~~., Alfano, M.	+	Biophysical and structural characterization of the putative nickel chaperone CooT from Carboxydothermus hydrogenoformans.,Alfano M, Perard J, Miras R, Catty P, Cavazza C J Biol Inorg Chem. 2018 Jun 7. pii: 10.1007/s00775-018-1576-2. doi:, 10.1007/s00775-018-1576-2. PMID:29882029<ref>PMID:29882029</ref>

-	~~Description: Crystal structure~~ of ~~putative CooT from Carboxydothermus hydrogenoformans~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: ~~Cavazza, C~~]]	+	<div class="pdbe-citations 6fan" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Carhz]]
	[[Category: Alfano, M]]		[[Category: Alfano, M]]
		+	[[Category: Cavazza, C]]
		+	[[Category: Carbon monoxide dehydrogenase]]
		+	[[Category: Maturation pathway]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Nickel chaperone]]

OCA: Protected "6fan" [edit=sysop:move=sysop]

OCA — Wed, 27 Dec 2017 07:29:49 GMT

Protected "6fan" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:29, 27 December 2017

OCA: New page: '''Unreleased structure''' The entry 6fan is ON HOLD Authors: Cavazza, C., Alfano, M. Description: Crystal structure of putative CooT from Carboxydothermus hydrogenoformans [[Category:...

OCA — Wed, 27 Dec 2017 07:29:48 GMT

New page: '''Unreleased structure''' The entry 6fan is ON HOLD Authors: Cavazza, C., Alfano, M. Description: Crystal structure of putative CooT from Carboxydothermus hydrogenoformans [[Category:...

New page

'''Unreleased structure'''

The entry 6fan is ON HOLD

Authors: Cavazza, C., Alfano, M.

Description: Crystal structure of putative CooT from Carboxydothermus hydrogenoformans
[[Category: Unreleased Structures]]
[[Category: Cavazza, C]]
[[Category: Alfano, M]]