6fwy - Revision history

OCA at 12:31, 9 May 2024

OCA — Thu, 09 May 2024 12:31:51 GMT

←Older revision		Revision as of 12:31, 9 May 2024
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	==Thioester domain of the Enterococcus faecium TIE86 protein==		==Thioester domain of the Enterococcus faecium TIE86 protein==
-	<StructureSection load='6fwy' size='340' side='right' caption='[[6fwy]], [[Resolution\|resolution]] 2.14Å' scene=''>	+	<StructureSection load='6fwy' size='340' side='right'caption='[[6fwy]], [[Resolution\|resolution]] 2.14Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6fwy]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_19434 Atcc 19434~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FWY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6FWY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6fwy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FWY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FWY FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~>, ~~<scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.14Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[6fwv\|6fwv]], [[6fx6\|6fx6]]~~<~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">B4W81_16995, BTA13_08335, DTPHA_1402599 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1352 ATCC 19434])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fwy OCA], [https://pdbe.org/6fwy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fwy RCSB], [https://www.ebi.ac.uk/pdbsum/6fwy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fwy ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6fwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fwy OCA], [~~http~~://pdbe.org/6fwy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6fwy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6fwy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6fwy ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A1A7T0E1_ENTFC A0A1A7T0E1_ENTFC]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 19434~~]]	+	[[Category: Enterococcus faecium]]
-	[[Category: ~~Banfield, M J~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Miller, O K~~]]	+	[[Category: Banfield MJ]]
-	[[Category: ~~Schwarz-Linek, U~~]]	+	[[Category: Miller OK]]
-	[[Category: ~~Lpxtg~~-~~anchored]]~~	+	[[Category: Schwarz-Linek U]]
-	~~[[Category: Surface protein]]~~	+
-	~~[[Category: Thioester domain]]~~	+
-	~~[[Category: Tie protein]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:17, 31 October 2018

OCA — Wed, 31 Oct 2018 07:17:30 GMT

←Older revision		Revision as of 07:17, 31 October 2018
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	<StructureSection load='6fwy' size='340' side='right' caption='[[6fwy]], [[Resolution\|resolution]] 2.14Å' scene=''>		<StructureSection load='6fwy' size='340' side='right' caption='[[6fwy]], [[Resolution\|resolution]] 2.14Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6fwy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FWY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FWY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6fwy]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19434 Atcc 19434]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FWY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FWY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6fwv\|6fwv]], [[6fx6\|6fx6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6fwv\|6fwv]], [[6fx6\|6fx6]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">B4W81_16995, BTA13_08335, DTPHA_1402599 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1352 ATCC 19434])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fwy OCA], [http://pdbe.org/6fwy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fwy RCSB], [http://www.ebi.ac.uk/pdbsum/6fwy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fwy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fwy OCA], [http://pdbe.org/6fwy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fwy RCSB], [http://www.ebi.ac.uk/pdbsum/6fwy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fwy ProSAT]</span></td></tr>
	</table>		</table>
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 19434]]
	[[Category: Banfield, M J]]		[[Category: Banfield, M J]]
	[[Category: Miller, O K]]		[[Category: Miller, O K]]

OCA at 21:54, 9 August 2018

OCA — Thu, 09 Aug 2018 21:54:37 GMT

←Older revision		Revision as of 21:54, 9 August 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6fwy is ~~ON HOLD until Paper~~ Publication	+	==Thioester domain of the Enterococcus faecium TIE86 protein==
		+	<StructureSection load='6fwy' size='340' side='right' caption='[[6fwy]], [[Resolution\|resolution]] 2.14Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6fwy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FWY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FWY FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6fwv\|6fwv]], [[6fx6\|6fx6]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fwy OCA], [http://pdbe.org/6fwy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fwy RCSB], [http://www.ebi.ac.uk/pdbsum/6fwy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fwy ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	An increasing number of surface-associated proteins identified in Gram-positive bacteria are characterized by intramolecular cross-links in structurally conserved thioester, isopeptide, and ester domains (TIE proteins). Two classes of thioester domains (TEDs) have been predicted based on sequence with, to date, only representatives of class I structurally characterized. Here, we present crystal structures of three class II TEDs from Bacillus anthracis, vancomycin-resistant Staphylococcus aureus, and vancomycin-resistant Enterococcus faecium. These proteins are structurally distinct from class I TEDs due to a beta-sandwich domain that is inserted into the conserved TED fold to form a slipknot structure. Further, the B. anthracis TED domain is presented in the context of a full-length sortase-anchored protein structure (BaTIE). This provides insight into the three-dimensional arrangement of TIE proteins, which emerge as very abundant putative adhesins of Gram-positive bacteria. This article is protected by copyright. All rights reserved.

-	~~Authors: Miller, O.K~~., Banfield~~, M.J.~~, Schwarz-Linek, U.	+	A new structural class of bacterial thioester domains reveals a slipknot topology.,Miller OK, Banfield MJ, Schwarz-Linek U Protein Sci. 2018 Jul 27. doi: 10.1002/pro.3478. PMID:30052296<ref>PMID:30052296</ref>

-	~~Description: Thioester domain~~ of the ~~Enterococcus faecium TIE86 protein~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Banfield~~, ~~M.J~~]]	+	<div class="pdbe-citations 6fwy" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Banfield, M J]]
		+	[[Category: Miller, O K]]
	[[Category: Schwarz-Linek, U]]		[[Category: Schwarz-Linek, U]]
-	[[Category: ~~Miller, O.K~~]]	+	[[Category: Lpxtg-anchored]]
		+	[[Category: Surface protein]]
		+	[[Category: Thioester domain]]
		+	[[Category: Tie protein]]
		+	[[Category: Unknown function]]

OCA at 06:18, 21 March 2018

OCA — Wed, 21 Mar 2018 06:18:23 GMT

←Older revision		Revision as of 06:18, 21 March 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6fwy is ON HOLD	+	The entry 6fwy is ON HOLD until Paper Publication

	Authors: Miller, O.K., Banfield, M.J., Schwarz-Linek, U.		Authors: Miller, O.K., Banfield, M.J., Schwarz-Linek, U.

OCA: Protected "6fwy" [edit=sysop:move=sysop]

OCA — Wed, 14 Mar 2018 05:18:53 GMT

Protected "6fwy" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:18, 14 March 2018

OCA: New page: '''Unreleased structure''' The entry 6fwy is ON HOLD Authors: Miller, O.K., Banfield, M.J., Schwarz-Linek, U. Description: Thioester domain of the Enterococcus faecium TIE86 protein [[...

OCA — Wed, 14 Mar 2018 05:18:52 GMT

New page: '''Unreleased structure''' The entry 6fwy is ON HOLD Authors: Miller, O.K., Banfield, M.J., Schwarz-Linek, U. Description: Thioester domain of the Enterococcus faecium TIE86 protein [[...

New page

'''Unreleased structure'''

The entry 6fwy is ON HOLD

Authors: Miller, O.K., Banfield, M.J., Schwarz-Linek, U.

Description: Thioester domain of the Enterococcus faecium TIE86 protein
[[Category: Unreleased Structures]]
[[Category: Banfield, M.J]]
[[Category: Schwarz-Linek, U]]
[[Category: Miller, O.K]]