6g14 - Revision history

OCA at 06:21, 2 January 2019

OCA — Wed, 02 Jan 2019 06:21:19 GMT

←Older revision		Revision as of 06:21, 2 January 2019
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	<StructureSection load='6g14' size='340' side='right' caption='[[6g14]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6g14' size='340' side='right' caption='[[6g14]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6g14]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G14 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6G14 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6g14]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staa3 Staa3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G14 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6G14 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAUSA300_1136 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=367830 STAA3])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6g14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g14 OCA], [http://pdbe.org/6g14 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6g14 RCSB], [http://www.ebi.ac.uk/pdbsum/6g14 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6g14 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6g14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g14 OCA], [http://pdbe.org/6g14 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6g14 RCSB], [http://www.ebi.ac.uk/pdbsum/6g14 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6g14 ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Staa3]]
	[[Category: Bange, G]]		[[Category: Bange, G]]
	[[Category: Pausch, P]]		[[Category: Pausch, P]]
	[[Category: Cpgtpase]]		[[Category: Cpgtpase]]
	[[Category: Rna binding protein]]		[[Category: Rna binding protein]]

OCA at 12:17, 7 November 2018

OCA — Wed, 07 Nov 2018 12:17:41 GMT

←Older revision		Revision as of 12:17, 7 November 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 6g14 is ~~ON HOLD~~	+	==Crystal structure of ppGpp bound RbgA from S. aureus==
		+	<StructureSection load='6g14' size='340' side='right' caption='[[6g14]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6g14]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G14 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6G14 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6g14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g14 OCA], [http://pdbe.org/6g14 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6g14 RCSB], [http://www.ebi.ac.uk/pdbsum/6g14 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6g14 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/A0A0H2XK72_STAA3 A0A0H2XK72_STAA3]] Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity.[PIRNR:PIRNR006230]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Efficient adaptation to environmental changes is pivotal for all bacterial cells. Almost all bacterial species depend on the conserved stringent response system to prompt timely transcriptional and metabolic responses according to stress conditions and nutrient depletion. The stringent response relies on the stress-dependent synthesis of the second messenger nucleotides and alarmones (p)ppGpp, which pleiotropically target and reprogram processes that consume cellular resources, such as ribosome biogenesis. Here we show that (p)ppGpp acts on the ribosome biogenesis GTPase A (RbgA) of Gram-positive bacteria. Using X-ray crystallography, hydrogen-deuterium exchange mass spectrometry (HDX-MS) and kinetic analysis, we demonstrate that the alarmones (p)ppGpp bind to RbgA in a manner similar to that of binding by GDP and GTP and therby act as competitive inhibitors. Our structural analysis of Staphylococcus aureus RbgA bound to ppGpp and pppGpp at 1.8 A and 1.65 A resolution, respectively, suggested that the alarmones (p)ppGpp prevent the active GTPase conformation of RbgA by sterically blocking the association of its G2 motif via their 3'-pyrophosphate moieties. Taken together, our structural and biochemical characterization of RbgA in the context of the alarmone-mediated stringent response reveals how (p)ppGpp affects the function of RbgA and reprograms this GTPase to arrest the ribosomal large subunit.

-	~~Authors: Pausch~~, P., ~~Bange~~, G.	+	Structural basis for (p)ppGpp-mediated inhibition of the GTPase RbgA.,Pausch P, Steinchen W, Wieland M, Klaus T, Freibert SA, Altegoer F, Wilson DN, Bange G J Biol Chem. 2018 Oct 26. pii: RA118.003070. doi: 10.1074/jbc.RA118.003070. PMID:30366986<ref>PMID:30366986</ref>

-	~~Description: Crystal structure~~ of ~~ppGpp bound RbgA from~~ S. ~~aureus~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 6g14" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bange, G]]		[[Category: Bange, G]]
	[[Category: Pausch, P]]		[[Category: Pausch, P]]
		+	[[Category: Cpgtpase]]
		+	[[Category: Rna binding protein]]

OCA: Protected "6g14" [edit=sysop:move=sysop]

OCA — Wed, 28 Mar 2018 05:28:58 GMT

Protected "6g14" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:28, 28 March 2018

OCA: New page: '''Unreleased structure''' The entry 6g14 is ON HOLD Authors: Pausch, P., Bange, G. Description: Crystal structure of ppGpp bound RbgA from S. aureus [[Category: Unreleased Structures]...

OCA — Wed, 28 Mar 2018 05:28:57 GMT

New page: '''Unreleased structure''' The entry 6g14 is ON HOLD Authors: Pausch, P., Bange, G. Description: Crystal structure of ppGpp bound RbgA from S. aureus [[Category: Unreleased Structures]...

New page

'''Unreleased structure'''

The entry 6g14 is ON HOLD

Authors: Pausch, P., Bange, G.

Description: Crystal structure of ppGpp bound RbgA from S. aureus
[[Category: Unreleased Structures]]
[[Category: Bange, G]]
[[Category: Pausch, P]]