6gbb - Revision history

OCA at 12:39, 13 March 2019

OCA — Wed, 13 Mar 2019 12:39:44 GMT

←Older revision		Revision as of 12:39, 13 March 2019
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	==Copper nitrite reductase from Achromobacter cycloclastes: large cell polymorph dataset 1==		==Copper nitrite reductase from Achromobacter cycloclastes: large cell polymorph dataset 1==
-	<StructureSection load='6gbb' size='340' side='right' caption='[[6gbb]], [[Resolution\|resolution]] 1.48Å' scene=''>	+	<StructureSection load='6gbb' size='340' side='right'caption='[[6gbb]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6gbb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GBB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GBB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6gbb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_cycloclastes"_(gray_and_thornton)_bergey_et_al. "achromobacter cycloclastes" (gray and thornton) bergey et al.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GBB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GBB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nirK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223 "Achromobacter cycloclastes" (Gray and Thornton) Bergey et al.])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gbb OCA], [http://pdbe.org/6gbb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gbb RCSB], [http://www.ebi.ac.uk/pdbsum/6gbb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gbb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gbb OCA], [http://pdbe.org/6gbb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gbb RCSB], [http://www.ebi.ac.uk/pdbsum/6gbb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gbb ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The ability to determine high-quality, artefact-free structures is a challenge in micro-crystallography, and the rapid onset of radiation damage and requirement for a high-brilliance X-ray beam mean that a multi-crystal approach is essential. However, the combination of crystal-to-crystal variation and X-ray-induced changes can make the formation of a final complete data set challenging; this is particularly true in the case of metalloproteins, where X-ray-induced changes occur rapidly and at the active site. An approach is described that allows the resolution, separation and structure determination of crystal polymorphs, and the tracking of radiation damage in microcrystals. Within the microcrystal population of copper nitrite reductase, two polymorphs with different unit-cell sizes were successfully separated to determine two independent structures, and an X-ray-driven change between these polymorphs was followed. This was achieved through the determination of multiple serial structures from microcrystals using a high-throughput high-speed fixed-target approach coupled with robust data processing.
		+
		+	Resolving polymorphs and radiation-driven effects in microcrystals using fixed-target serial synchrotron crystallography.,Ebrahim A, Appleby MV, Axford D, Beale J, Moreno-Chicano T, Sherrell DA, Strange RW, Hough MA, Owen RL Acta Crystallogr D Struct Biol. 2019 Feb 1;75(Pt 2):151-159. doi:, 10.1107/S2059798318010240. Epub 2018 Nov 9. PMID:30821704<ref>PMID:30821704</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6gbb" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Appleby, M V]]		[[Category: Appleby, M V]]
	[[Category: Axford, D]]		[[Category: Axford, D]]

OCA at 08:24, 30 January 2019

OCA — Wed, 30 Jan 2019 08:24:34 GMT

←Older revision		Revision as of 08:24, 30 January 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6gbb ~~is ON HOLD until Paper Publication~~	+	==Copper nitrite reductase from Achromobacter cycloclastes: large cell polymorph dataset 1==
-		+	<StructureSection load='6gbb' size='340' side='right' caption='[[6gbb]], [[Resolution\|resolution]] 1.48Å' scene=''>
-	~~Authors~~: ~~Ebrahim, A~~.~~, Appleby, M~~.V.~~, Axford, D~~.~~, Beale, J~~.~~, Moreno~~-~~Chicano~~, T., ~~Sherrell~~, D.A., ~~Strange~~, R.W., ~~Owen, R~~.L., ~~Hough, M~~.A.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6gbb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GBB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GBB FirstGlance]. <br>
-	~~Description: Copper nitrite reductase from Achromobacter cycloclastes: large cell polymorph dataset 1~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] </span></td></tr>
-	[[Category: ~~Sherrell~~, D.A]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gbb OCA], [http://pdbe.org/6gbb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gbb RCSB], [http://www.ebi.ac.uk/pdbsum/6gbb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gbb ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Appleby, M V]]
		+	[[Category: Axford, D]]
	[[Category: Beale, J]]		[[Category: Beale, J]]
	[[Category: Ebrahim, A]]		[[Category: Ebrahim, A]]
-	[[Category: ~~Owen~~, ~~R.L~~]]	+	[[Category: Hough, M A]]
	[[Category: Moreno-Chicano, T]]		[[Category: Moreno-Chicano, T]]
-	[[Category: ~~Hough~~, M.A]]	+	[[Category: Owen, R L]]
-	[[Category: Strange, R.W]]	+	[[Category: Sherrell, D A]]
-	[[Category: ~~Axford, D~~]]	+	[[Category: Strange, R W]]
-	[[Category: ~~Appleby, M.V~~]]	+	[[Category: Copper]]
		+	[[Category: Denitrification]]
		+	[[Category: Nitrite reductase]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Polymorph]]
		+	[[Category: Serial synchrotron crystallography]]

OCA at 06:51, 2 May 2018

OCA — Wed, 02 May 2018 06:51:51 GMT

←Older revision		Revision as of 06:51, 2 May 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6gbb is ON HOLD	+	The entry 6gbb is ON HOLD until Paper Publication

	Authors: Ebrahim, A., Appleby, M.V., Axford, D., Beale, J., Moreno-Chicano, T., Sherrell, D.A., Strange, R.W., Owen, R.L., Hough, M.A.		Authors: Ebrahim, A., Appleby, M.V., Axford, D., Beale, J., Moreno-Chicano, T., Sherrell, D.A., Strange, R.W., Owen, R.L., Hough, M.A.

OCA: Protected "6gbb" [edit=sysop:move=sysop]

OCA — Wed, 25 Apr 2018 04:18:49 GMT

Protected "6gbb" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:18, 25 April 2018

OCA: New page: '''Unreleased structure''' The entry 6gbb is ON HOLD Authors: Ebrahim, A., Appleby, M.V., Axford, D., Beale, J., Moreno-Chicano, T., Sherrell, D.A., Strange, R.W., Owen, R.L., Hough, M....

OCA — Wed, 25 Apr 2018 04:18:47 GMT

New page: '''Unreleased structure''' The entry 6gbb is ON HOLD Authors: Ebrahim, A., Appleby, M.V., Axford, D., Beale, J., Moreno-Chicano, T., Sherrell, D.A., Strange, R.W., Owen, R.L., Hough, M....

New page

'''Unreleased structure'''

The entry 6gbb is ON HOLD

Authors: Ebrahim, A., Appleby, M.V., Axford, D., Beale, J., Moreno-Chicano, T., Sherrell, D.A., Strange, R.W., Owen, R.L., Hough, M.A.

Description: Copper nitrite reductase from Achromobacter cycloclastes: large cell polymorph dataset 1
[[Category: Unreleased Structures]]
[[Category: Sherrell, D.A]]
[[Category: Beale, J]]
[[Category: Ebrahim, A]]
[[Category: Owen, R.L]]
[[Category: Moreno-Chicano, T]]
[[Category: Hough, M.A]]
[[Category: Strange, R.W]]
[[Category: Axford, D]]
[[Category: Appleby, M.V]]