6gnl - Revision history

OCA at 09:02, 14 November 2018

OCA — Wed, 14 Nov 2018 09:02:42 GMT

←Older revision		Revision as of 09:02, 14 November 2018
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	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>		[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The successful cocrystallization of the noncovalent complex formed between (Et2NH2)8[{alpha-PW11O39Zr-(mu-OH)(H2O)}2].7H2O Keggin polyoxometalate (2) and Hen Egg White Lysozyme (HEWL) protein is reported. The resulting structural model revealed interaction between monomeric [Zr(PW11O39)](4-)(1), which is a postulated catalytically active species, and the protein in two positions in the asymmetric unit. The first position (occupancy 36%) confirms the previously observed binding sites on the protein surface, whereas the second position (occupancy 14%) provides novel insights into the hydrolytic mechanisms of Zr(IV)-substituted polyoxometalates. The new interaction site occurs at the Asn65 residue, which is directly next to the Asp66-Gly67 peptide bond that was identified recently as a cleavage site in the polyoxometalate-catalysed hydrolysis of HEWL. Furthermore, in this newly discovered binding site, the monomeric polyoxometalate 1 is observed to bind directly to the side chain of the Asn65 residue. This binding of Zr(IV) as a Lewis-acid metal to the carbonyl O atom of the Asn65 side chain is very similar to the intermediate state proposed in density functional theory (DFT) studies in which Zr(IV) activates the peptide bond via interaction with its carbonyl O atom, and can be thus regarded as a model for interaction between Zr(IV) and a peptide bond.
		+
		+	Direct observation of the Zr(IV) interaction with the carboxamide bond in a noncovalent complex between Hen Egg White Lysozyme and a Zr-substituted Keggin polyoxometalate.,Vandebroek L, Van Meervelt L, Parac-Vogt TN Acta Crystallogr C Struct Chem. 2018 Nov 1;74(Pt 11):1348-1354. doi:, 10.1107/S2053229618010690. Epub 2018 Oct 19. PMID:30398187<ref>PMID:30398187</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6gnl" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:57, 31 October 2018

OCA — Wed, 31 Oct 2018 06:57:16 GMT

←Older revision		Revision as of 06:57, 31 October 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6gnl is ON HOLD~~	+	==Zr(IV)-substituted Keggin directly binding to the side chain of Hen Egg-White Lysozyme (HEWL)==
-		+	<StructureSection load='6gnl' size='340' side='right' caption='[[6gnl]], [[Resolution\|resolution]] 1.23Å' scene=''>
-	~~Authors: Vandebroek, L., Van Meervelt, L., Parac-Vogt, T.N.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6gnl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GNL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GNL FirstGlance]. <br>
-	~~Description:~~ Zr(IV)-substituted Keggin directly binding to the side chain of Hen Egg-White Lysozyme (HEWL)	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZKG:ZIRCONIUM(IV)+PHOSPHOTUNGSTATE+KEGGIN'>ZKG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4xyy\|4xyy]], [[5fhw\|5fhw]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gnl OCA], [http://pdbe.org/6gnl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gnl RCSB], [http://www.ebi.ac.uk/pdbsum/6gnl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gnl ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Meervelt, L Van]]
		+	[[Category: Parac-Vogt, T N]]
	[[Category: Vandebroek, L]]		[[Category: Vandebroek, L]]
-	[[Category: ~~Van Meervelt, L~~]]	+	[[Category: Catalysis]]
-	[[Category: ~~Parac~~-~~Vogt, T.N~~]]	+	[[Category: Co-crystal]]
		+	[[Category: Hydrolase]]
		+	[[Category: Hydrolysis]]

OCA: Protected "6gnl" [edit=sysop:move=sysop]

OCA — Wed, 06 Jun 2018 04:32:21 GMT

Protected "6gnl" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:32, 6 June 2018

OCA: New page: '''Unreleased structure''' The entry 6gnl is ON HOLD Authors: Vandebroek, L., Van Meervelt, L., Parac-Vogt, T.N. Description: Zr(IV)-substituted Keggin directly binding to the side cha...

OCA — Wed, 06 Jun 2018 04:32:20 GMT

New page: '''Unreleased structure''' The entry 6gnl is ON HOLD Authors: Vandebroek, L., Van Meervelt, L., Parac-Vogt, T.N. Description: Zr(IV)-substituted Keggin directly binding to the side cha...

New page

'''Unreleased structure'''

The entry 6gnl is ON HOLD

Authors: Vandebroek, L., Van Meervelt, L., Parac-Vogt, T.N.

Description: Zr(IV)-substituted Keggin directly binding to the side chain of Hen Egg-White Lysozyme (HEWL)
[[Category: Unreleased Structures]]
[[Category: Vandebroek, L]]
[[Category: Van Meervelt, L]]
[[Category: Parac-Vogt, T.N]]