6gth - Revision history

OCA at 16:05, 13 December 2023

OCA — Wed, 13 Dec 2023 16:05:19 GMT

←Older revision		Revision as of 16:05, 13 December 2023
Line 1:		Line 1:

	==Serial Femtosecond Crystallography at Megahertz pulse rates==		==Serial Femtosecond Crystallography at Megahertz pulse rates==
-	<StructureSection load='6gth' size='340' side='right' caption='[[6gth]], [[Resolution\|resolution]] 1.69Å' scene=''>	+	<StructureSection load='6gth' size='340' side='right'caption='[[6gth]], [[Resolution\|resolution]] 1.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6gth]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus~~ pneumoniae~~" (schroeter 1886) flugge 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GTH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6GTH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6gth]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GTH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6GTH FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=NXL:(2S~~,~~5R)-1-FORMYL-5-~~[~~(SULFOOXY)AMINO~~]~~PIPERIDINE-2-CARBOXAMIDE'>NXL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.69Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>ctx-m-14 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~573~~ "~~Bacillus pneumoniae~~" ~~(Schroeter 1886) Flugge 1886])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NXL:(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE'>NXL</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta~~-~~lactamase Beta~~-~~lactamase~~]~~, with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.5.~~2~~.6 3.5.2.6]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6gth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gth OCA], [https://pdbe.org/6gth PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6gth RCSB], [https://www.ebi.ac.uk/pdbsum/6gth PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6gth ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6gth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gth OCA], [~~http~~://pdbe.org/6gth PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6gth RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6gth PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6gth ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0H3H219_KLEPH A0A0H3H219_KLEPH]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 6gth" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6gth" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Beta-lactamase 3D structures\|Beta-lactamase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Beta-lactamase~~]]	+	[[Category: Klebsiella pneumoniae]]
-	[[Category: Barty, A]]	+	[[Category: Large Structures]]
-	[[Category: Betzel, C]]	+	[[Category: Barty A]]
-	[[Category: Chapman, H]]	+	[[Category: Betzel C]]
-	[[Category: Mancuso, A]]	+	[[Category: Chapman H]]
-	[[Category: Oberthuer, D]]	+	[[Category: Mancuso A]]
-	[[Category: Perbandt, M]]	+	[[Category: Oberthuer D]]
-	[[Category: Schubert, R]]	+	[[Category: Perbandt M]]
-	[[Category: Werner, N]]	+	[[Category: Schubert R]]
-	[[Category: White~~, T A~~]]	+	[[Category: Werner N]]
-	[[Category: Wiedorn, M]]	+	[[Category: White TA]]
-	~~[[Category: Antibiotic]]~~	+	[[Category: Wiedorn M]]
-	~~[[Category: Avibactam]]~~	+
-	~~[[Category: Complex]]~~	+
-	~~[[Category: Inhibitor]]~~	+
-	~~[[Category: Ser-beta-lactamase~~]]	+

OCA at 08:41, 17 October 2018

OCA — Wed, 17 Oct 2018 08:41:10 GMT

←Older revision		Revision as of 08:41, 17 October 2018
Line 3:		Line 3:
	<StructureSection load='6gth' size='340' side='right' caption='[[6gth]], [[Resolution\|resolution]] 1.69Å' scene=''>		<StructureSection load='6gth' size='340' side='right' caption='[[6gth]], [[Resolution\|resolution]] 1.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6gth]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GTH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6gth]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus pneumoniae" (schroeter 1886) flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GTH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NXL:(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE'>NXL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NXL:(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE'>NXL</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ctx-m-14 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=573 "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gth OCA], [http://pdbe.org/6gth PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gth RCSB], [http://www.ebi.ac.uk/pdbsum/6gth PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gth ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gth OCA], [http://pdbe.org/6gth PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gth RCSB], [http://www.ebi.ac.uk/pdbsum/6gth PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gth ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The new European X-ray Free-Electron Laser is the first X-ray free-electron laser capable of delivering X-ray pulses with a megahertz inter-pulse spacing, more than four orders of magnitude higher than previously possible. However, to date, it has been unclear whether it would indeed be possible to measure high-quality diffraction data at megahertz pulse repetition rates. Here, we show that high-quality structures can indeed be obtained using currently available operating conditions at the European XFEL. We present two complete data sets, one from the well-known model system lysozyme and the other from a so far unknown complex of a beta-lactamase from K. pneumoniae involved in antibiotic resistance. This result opens up megahertz serial femtosecond crystallography (SFX) as a tool for reliable structure determination, substrate screening and the efficient measurement of the evolution and dynamics of molecular structures using megahertz repetition rate pulses available at this new class of X-ray laser source.
		+
		+	Megahertz serial crystallography.,Wiedorn MO, Oberthur D, Bean R, Schubert R, Werner N, Abbey B, Aepfelbacher M, Adriano L, Allahgholi A, Al-Qudami N, Andreasson J, Aplin S, Awel S, Ayyer K, Bajt S, Barak I, Bari S, Bielecki J, Botha S, Boukhelef D, Brehm W, Brockhauser S, Cheviakov I, Coleman MA, Cruz-Mazo F, Danilevski C, Darmanin C, Doak RB, Domaracky M, Dorner K, Du Y, Fangohr H, Fleckenstein H, Frank M, Fromme P, Ganan-Calvo AM, Gevorkov Y, Giewekemeyer K, Ginn HM, Graafsma H, Graceffa R, Greiffenberg D, Gumprecht L, Gottlicher P, Hajdu J, Hauf S, Heymann M, Holmes S, Horke DA, Hunter MS, Imlau S, Kaukher A, Kim Y, Klyuev A, Knoska J, Kobe B, Kuhn M, Kupitz C, Kupper J, Lahey-Rudolph JM, Laurus T, Le Cong K, Letrun R, Xavier PL, Maia L, Maia FRNC, Mariani V, Messerschmidt M, Metz M, Mezza D, Michelat T, Mills G, Monteiro DCF, Morgan A, Muhlig K, Munke A, Munnich A, Nette J, Nugent KA, Nuguid T, Orville AM, Pandey S, Pena G, Villanueva-Perez P, Poehlsen J, Previtali G, Redecke L, Riekehr WM, Rohde H, Round A, Safenreiter T, Sarrou I, Sato T, Schmidt M, Schmitt B, Schonherr R, Schulz J, Sellberg JA, Seibert MM, Seuring C, Shelby ML, Shoeman RL, Sikorski M, Silenzi A, Stan CA, Shi X, Stern S, Sztuk-Dambietz J, Szuba J, Tolstikova A, Trebbin M, Trunk U, Vagovic P, Ve T, Weinhausen B, White TA, Wrona K, Xu C, Yefanov O, Zatsepin N, Zhang J, Perbandt M, Mancuso AP, Betzel C, Chapman H, Barty A Nat Commun. 2018 Oct 2;9(1):4025. doi: 10.1038/s41467-018-06156-7. PMID:30279492<ref>PMID:30279492</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6gth" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:14, 10 October 2018

OCA — Wed, 10 Oct 2018 08:14:58 GMT

←Older revision		Revision as of 08:14, 10 October 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6gth is ~~ON HOLD until Paper Publication~~	+	==Serial Femtosecond Crystallography at Megahertz pulse rates==
-		+	<StructureSection load='6gth' size='340' side='right' caption='[[6gth]], [[Resolution\|resolution]] 1.69Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6gth]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GTH FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NXL:(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE'>NXL</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gth OCA], [http://pdbe.org/6gth PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gth RCSB], [http://www.ebi.ac.uk/pdbsum/6gth PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gth ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Beta-lactamase]]
		+	[[Category: Barty, A]]
		+	[[Category: Betzel, C]]
		+	[[Category: Chapman, H]]
		+	[[Category: Mancuso, A]]
		+	[[Category: Oberthuer, D]]
		+	[[Category: Perbandt, M]]
		+	[[Category: Schubert, R]]
		+	[[Category: Werner, N]]
		+	[[Category: White, T A]]
		+	[[Category: Wiedorn, M]]
		+	[[Category: Antibiotic]]
		+	[[Category: Avibactam]]
		+	[[Category: Complex]]
		+	[[Category: Inhibitor]]
		+	[[Category: Ser-beta-lactamase]]

OCA: Protected "6gth" [edit=sysop:move=sysop]

OCA — Wed, 27 Jun 2018 04:12:01 GMT

Protected "6gth" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:12, 27 June 2018

OCA: New page: '''Unreleased structure''' The entry 6gth is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 27 Jun 2018 04:12:00 GMT

New page: '''Unreleased structure''' The entry 6gth is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6gth is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]