6h9h - Revision history

OCA at 09:04, 14 November 2018

OCA — Wed, 14 Nov 2018 09:04:51 GMT

←Older revision		Revision as of 09:04, 14 November 2018
Line 3:		Line 3:
	<StructureSection load='6h9h' size='340' side='right' caption='[[6h9h]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='6h9h' size='340' side='right' caption='[[6h9h]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6h9h]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H9H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H9H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6h9h]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Aroae Aroae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H9H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H9H FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=23G:GUANOSINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>23G</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=23G:GUANOSINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>23G</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">p1B372 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=76114 AROAE])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h9h OCA], [http://pdbe.org/6h9h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h9h RCSB], [http://www.ebi.ac.uk/pdbsum/6h9h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h9h ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h9h OCA], [http://pdbe.org/6h9h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h9h RCSB], [http://www.ebi.ac.uk/pdbsum/6h9h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h9h ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Type IV CRISPR-Cas modules belong to class 1 prokaryotic adaptive immune systems, which are defined by the presence of multisubunit effector complexes. They usually lack the known Cas proteins involved in adaptation and target cleavage, and their function has not been experimentally addressed. To investigate RNA and protein components of this CRISPR-Cas type, we located a complete type IV cas gene locus and an adjacent CRISPR array on a megaplasmid of Aromatoleum aromaticum EbN1, which contains an additional type I-C system on its chromosome. RNA sequencing analyses verified CRISPR RNA (crRNA) production and maturation for both systems. Type IV crRNAs were shown to harbour unusually short 7 nucleotide 5'-repeat tags and stable 3' hairpin structures. A unique Cas6 variant (Csf5) was identified that generates crRNAs that are specifically incorporated into type IV CRISPR-ribonucleoprotein (crRNP) complexes. Structures of RNA-bound Csf5 were obtained. Recombinant production and purification of the type IV Cas proteins, together with electron microscopy, revealed that Csf2 acts as a helical backbone for type IV crRNPs that include Csf5, Csf3 and a large subunit (Csf1). Mass spectrometry analyses identified protein-protein and protein-RNA contact sites. These results highlight evolutionary connections between type IV and type I CRISPR-Cas systems and demonstrate that type IV CRISPR-Cas systems employ crRNA-guided effector complexes.
		+
		+	Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum.,Ozcan A, Pausch P, Linden A, Wulf A, Schuhle K, Heider J, Urlaub H, Heimerl T, Bange G, Randau L Nat Microbiol. 2018 Nov 5. pii: 10.1038/s41564-018-0274-8. doi:, 10.1038/s41564-018-0274-8. PMID:30397343<ref>PMID:30397343</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6h9h" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aroae]]
	[[Category: Bange, G]]		[[Category: Bange, G]]
	[[Category: Pausch, P]]		[[Category: Pausch, P]]

OCA at 08:17, 26 September 2018

OCA — Wed, 26 Sep 2018 08:17:20 GMT

←Older revision		Revision as of 08:17, 26 September 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6h9h ~~is ON HOLD until Paper Publication~~	+	==Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease==
-		+	<StructureSection load='6h9h' size='340' side='right' caption='[[6h9h]], [[Resolution\|resolution]] 1.75Å' scene=''>
-	~~Authors~~: ~~Pausch, P~~., ~~Bange~~, G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6h9h]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H9H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H9H FirstGlance]. <br>
-	~~Description~~: ~~Csf5~~, ~~CRISPR~~-~~Cas type IV Cas6 crRNA endonuclease~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=23G:GUANOSINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>23G</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h9h OCA], [http://pdbe.org/6h9h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h9h RCSB], [http://www.ebi.ac.uk/pdbsum/6h9h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h9h ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bange, G]]		[[Category: Bange, G]]
	[[Category: Pausch, P]]		[[Category: Pausch, P]]
		+	[[Category: Crrna biogenesis]]
		+	[[Category: Endonuclease]]
		+	[[Category: Rna binding protein]]
		+	[[Category: Type iv crispr-ca]]

OCA: Protected "6h9h" [edit=sysop:move=sysop]

OCA — Wed, 15 Aug 2018 14:59:55 GMT

Protected "6h9h" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:59, 15 August 2018

OCA: New page: '''Unreleased structure''' The entry 6h9h is ON HOLD until Paper Publication Authors: Pausch, P., Bange, G. Description: Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease [[Category: Un...

OCA — Wed, 15 Aug 2018 14:59:54 GMT

New page: '''Unreleased structure''' The entry 6h9h is ON HOLD until Paper Publication Authors: Pausch, P., Bange, G. Description: Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease [[Category: Un...

New page

'''Unreleased structure'''

The entry 6h9h is ON HOLD until Paper Publication

Authors: Pausch, P., Bange, G.

Description: Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease
[[Category: Unreleased Structures]]
[[Category: Bange, G]]
[[Category: Pausch, P]]