6hqb - Revision history

OCA at 09:31, 30 January 2019

OCA — Wed, 30 Jan 2019 09:31:55 GMT

←Older revision		Revision as of 09:31, 30 January 2019
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	<StructureSection load='6hqb' size='340' side='right' caption='[[6hqb]], [[Resolution\|resolution]] 4.00Å' scene=''>		<StructureSection load='6hqb' size='340' side='right' caption='[[6hqb]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6hqb]] is a 11 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Synechocystis_sp._(strain_pcc_6803_/_kazusa) Synechocystis sp. (strain pcc 6803 / kazusa)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HQB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6hqb]] is a 11 chain structure with sequence from [http://en.wikipedia.org/wiki/Syny3 Syny3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HQB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=45D:BETA,BETA-CAROTENE-4,4-DIONE'>45D</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=C7Z:(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol'>C7Z</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=ECH:BETA,BETA-CAROTEN-4-ONE'>ECH</scene>, <scene name='pdbligand=EQ3:(3R)-3-HYDROXY-BETA,BETA-CAROTEN-4-ONE'>EQ3</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=45D:BETA,BETA-CAROTENE-4,4-DIONE'>45D</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=C7Z:(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol'>C7Z</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=ECH:BETA,BETA-CAROTEN-4-ONE'>ECH</scene>, <scene name='pdbligand=EQ3:(3R)-3-HYDROXY-BETA,BETA-CAROTEN-4-ONE'>EQ3</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_I Photosystem I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.12 1.97.1.12] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_I Photosystem I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.12 1.97.1.12] </span></td></tr>
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	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/PSAE_SYNY3 PSAE_SYNY3]] Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.[HAMAP-Rule:MF_00613]		[[http://www.uniprot.org/uniprot/PSAE_SYNY3 PSAE_SYNY3]] Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.[HAMAP-Rule:MF_00613]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A single histidine addition to the C-terminus of PsaL of Synechocystis sp. PCC 6803 was previously reported by our lab to shift the trimer-to-monomer ratio of PSI in favor of the monomeric form. P700 re-reduction and NADP(+) photo-reduction measurements of the PsaL(HIS) strain show no effect on PSI activity in comparison to the WT trimeric PSI. Crystal structure of the PsaL(HIS) monomeric PSI reveals several alterations that occurred in the trimerisation site of PSI, primarily a deformation of the C-terminus of PsaL and loss of chlorophyll a and beta-carotene molecules.
		+
		+	Crystal Structure of Photosystem I Monomer From Synechocystis PCC 6803.,Netzer-El SY, Caspy I, Nelson N Front Plant Sci. 2019 Jan 4;9:1865. doi: 10.3389/fpls.2018.01865. eCollection, 2018. PMID:30662446<ref>PMID:30662446</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6hqb" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Photosystem I]]		[[Category: Photosystem I]]
		+	[[Category: Syny3]]
	[[Category: Caspy, I]]		[[Category: Caspy, I]]
	[[Category: Nelson, N]]		[[Category: Nelson, N]]

OCA at 12:10, 16 January 2019

OCA — Wed, 16 Jan 2019 12:10:59 GMT

←Older revision		Revision as of 12:10, 16 January 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6hqb ~~is ON HOLD until Paper Publication~~	+	==Monomeric cyanobacterial photosystem I==
-		+	<StructureSection load='6hqb' size='340' side='right' caption='[[6hqb]], [[Resolution\|resolution]] 4.00Å' scene=''>
-	~~Authors~~: ~~Netzer~~-El, S.Y., ~~Nelson~~, N., ~~Caspy~~, I.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6hqb]] is a 11 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp._(strain_pcc_6803_/_kazusa) Synechocystis sp. (strain pcc 6803 / kazusa)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HQB FirstGlance]. <br>
-	~~Description: Monomeric cyanobacterial photosystem I~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=45D:BETA,BETA-CAROTENE-4,4-DIONE'>45D</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=C7Z:(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol'>C7Z</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=ECH:BETA,BETA-CAROTEN-4-ONE'>ECH</scene>, <scene name='pdbligand=EQ3:(3R)-3-HYDROXY-BETA,BETA-CAROTEN-4-ONE'>EQ3</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_I Photosystem I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.12 1.97.1.12] </span></td></tr>
-	[[Category: ~~Netzer-El, S.Y~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hqb OCA], [http://pdbe.org/6hqb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hqb RCSB], [http://www.ebi.ac.uk/pdbsum/6hqb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hqb ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PSAE_SYNY3 PSAE_SYNY3]] Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.[HAMAP-Rule:MF_00613]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Photosystem I]]
	[[Category: Caspy, I]]		[[Category: Caspy, I]]
	[[Category: Nelson, N]]		[[Category: Nelson, N]]
		+	[[Category: Netzer-El, S Y]]
		+	[[Category: Crystal structure]]
		+	[[Category: Cyanobacteria]]
		+	[[Category: Membrane complex]]
		+	[[Category: Photosynthesis]]
		+	[[Category: Photosystem i]]
		+	[[Category: Synechocysti]]

OCA at 18:28, 2 December 2018

OCA — Sun, 02 Dec 2018 18:28:14 GMT

←Older revision		Revision as of 18:28, 2 December 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6hqb is ON HOLD	+	The entry 6hqb is ON HOLD until Paper Publication

	Authors: Netzer-El, S.Y., Nelson, N., Caspy, I.		Authors: Netzer-El, S.Y., Nelson, N., Caspy, I.
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	Description: Monomeric cyanobacterial photosystem I		Description: Monomeric cyanobacterial photosystem I
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Nelson, N]]
	[[Category: Netzer-El, S.Y]]		[[Category: Netzer-El, S.Y]]
	[[Category: Caspy, I]]		[[Category: Caspy, I]]
		+	[[Category: Nelson, N]]

OCA: Protected "6hqb" [edit=sysop:move=sysop]

OCA — Wed, 03 Oct 2018 06:15:00 GMT

Protected "6hqb" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:15, 3 October 2018

OCA: New page: '''Unreleased structure''' The entry 6hqb is ON HOLD Authors: Netzer-El, S.Y., Nelson, N., Caspy, I. Description: Monomeric cyanobacterial photosystem I [[Category: Unreleased Structur...

OCA — Wed, 03 Oct 2018 06:14:59 GMT

New page: '''Unreleased structure''' The entry 6hqb is ON HOLD Authors: Netzer-El, S.Y., Nelson, N., Caspy, I. Description: Monomeric cyanobacterial photosystem I [[Category: Unreleased Structur...

New page

'''Unreleased structure'''

The entry 6hqb is ON HOLD

Authors: Netzer-El, S.Y., Nelson, N., Caspy, I.

Description: Monomeric cyanobacterial photosystem I
[[Category: Unreleased Structures]]
[[Category: Nelson, N]]
[[Category: Netzer-El, S.Y]]
[[Category: Caspy, I]]