6hun - Revision history

OCA at 11:40, 24 January 2024

OCA — Wed, 24 Jan 2024 11:40:00 GMT

←Older revision		Revision as of 11:40, 24 January 2024
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	<StructureSection load='6hun' size='340' side='right'caption='[[6hun]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6hun' size='340' side='right'caption='[[6hun]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6hun]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HUN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6HUN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6hun]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hyperthermus_butylicus_DSM_5456 Hyperthermus butylicus DSM 5456]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6HUN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CA:CALCIUM+ION'>CA</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.802Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6hun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hun OCA], [~~http~~://pdbe.org/6hun PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6hun RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6hun PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6hun ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6hun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hun OCA], [https://pdbe.org/6hun PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6hun RCSB], [https://www.ebi.ac.uk/pdbsum/6hun PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6hun ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/A2BK54_HYPBU A2BK54_HYPBU]] Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3-phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase.[HAMAP-Rule:MF_01133]	+	[https://www.uniprot.org/uniprot/A2BK54_HYPBU A2BK54_HYPBU] Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3-phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase.[HAMAP-Rule:MF_01133]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6hun" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6hun" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[RuBisCO 3D structures\|RuBisCO 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Hyperthermus butylicus DSM 5456]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Ribulose-bisphosphate carboxylase]]~~	+	[[Category: Bundela R]]
-	[[Category: Bundela, R]]	+	[[Category: Keown JR]]
-	[[Category: Keown~~, J R~~]]	+	[[Category: Pearce FG]]
-	[[Category: Pearce~~, F G]]~~	+
-	~~[[Category: 5-bisphosphate carboxylase oxygenase]]~~	+
-	~~[[Category: Hyperthermus butylicus]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Ribulose-1]]~~	+
-	~~[[Category: Rubisco]]~~	+
-	~~[[Category: Thermal stability~~]]	+

OCA at 07:26, 26 June 2019

OCA — Wed, 26 Jun 2019 07:26:32 GMT

←Older revision		Revision as of 07:26, 26 June 2019
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	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/A2BK54_HYPBU A2BK54_HYPBU]] Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3-phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase.[HAMAP-Rule:MF_01133]		[[http://www.uniprot.org/uniprot/A2BK54_HYPBU A2BK54_HYPBU]] Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3-phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase.[HAMAP-Rule:MF_01133]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from the hyperthermophilic archaeon Hyperthermus butylicus is presented at 1.8 A resolution. Previous structures of archaeal Rubisco have been found to assemble into decamers, and this oligomerization was thought to be required for a highly thermally stable enzyme. In the current study, H. butylicus Rubisco is shown to exist as a dimer in solution, yet has a thermal denaturation midpoint of 114 degrees C, suggesting that high thermal stability can be achieved without an increased oligomeric state. This increased thermal stability appears to be due to an increased number of electrostatic interactions within the monomeric subunit. As such, H. butylicus Rubisco presents a well characterized system in which to investigate the role of assembly and thermal stability in enzyme function.
		+
		+	Structure of a hyperthermostable dimeric archaeal Rubisco from Hyperthermus butylicus.,Bundela R, Keown J, Watkin S, Pearce FG Acta Crystallogr D Struct Biol. 2019 Jun 1;75(Pt 6):536-544. doi:, 10.1107/S2059798319006466. Epub 2019 May 28. PMID:31205016<ref>PMID:31205016</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6hun" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 05:34, 12 June 2019

OCA — Wed, 12 Jun 2019 05:34:42 GMT

←Older revision		Revision as of 05:34, 12 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6hun is ~~ON HOLD until Oct 09 2020~~	+	==Dimeric Archeal Rubisco from Hyperthermus butylicus==
-		+	<StructureSection load='6hun' size='340' side='right'caption='[[6hun]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6hun]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HUN FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hun OCA], [http://pdbe.org/6hun PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hun RCSB], [http://www.ebi.ac.uk/pdbsum/6hun PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hun ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/A2BK54_HYPBU A2BK54_HYPBU]] Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3-phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase.[HAMAP-Rule:MF_01133]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Ribulose-bisphosphate carboxylase]]
		+	[[Category: Bundela, R]]
		+	[[Category: Keown, J R]]
		+	[[Category: Pearce, F G]]
		+	[[Category: 5-bisphosphate carboxylase oxygenase]]
		+	[[Category: Hyperthermus butylicus]]
		+	[[Category: Photosynthesis]]
		+	[[Category: Ribulose-1]]
		+	[[Category: Rubisco]]
		+	[[Category: Thermal stability]]

OCA: Protected "6hun" [edit=sysop:move=sysop]

OCA — Wed, 17 Oct 2018 06:15:36 GMT

Protected "6hun" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:15, 17 October 2018

OCA: New page: '''Unreleased structure''' The entry 6hun is ON HOLD until Oct 09 2020 Authors: Description: Category: Unreleased Structures

OCA — Wed, 17 Oct 2018 06:15:35 GMT

New page: '''Unreleased structure''' The entry 6hun is ON HOLD until Oct 09 2020 Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6hun is ON HOLD until Oct 09 2020

Authors:

Description:
[[Category: Unreleased Structures]]