6i7b - Revision history

OCA at 01:39, 11 April 2020

OCA — Sat, 11 Apr 2020 01:39:49 GMT

←Older revision		Revision as of 01:39, 11 April 2020
Line 3:		Line 3:
	<SX load='6i7b' size='340' side='right' viewer='molstar' caption='[[6i7b]], [[Resolution\|resolution]] 10.00Å' scene=''>		<SX load='6i7b' size='340' side='right' viewer='molstar' caption='[[6i7b]], [[Resolution\|resolution]] 10.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6i7b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/wilson-smith/1933(h1n1)) Influenza a virus (a/wilson-smith/1933(h1n1))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I7B OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6I7B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6i7b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/wilson-smith/1933(h1n1)) Influenza a virus (a/wilson-smith/1933(h1n1))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I7B OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6I7B FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6i7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i7b OCA], [http://pdbe.org/6i7b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6i7b RCSB], [http://www.ebi.ac.uk/pdbsum/6i7b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6i7b ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6i7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i7b OCA], [http://pdbe.org/6i7b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6i7b RCSB], [http://www.ebi.ac.uk/pdbsum/6i7b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6i7b ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 10:12, 18 March 2020

OCA — Wed, 18 Mar 2020 10:12:44 GMT

←Older revision		Revision as of 10:12, 18 March 2020
Line 8:		Line 8:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/Q1K9H2_I33A0 Q1K9H2_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).[SAAS:SAAS002141_004_603280] [[http://www.uniprot.org/uniprot/NCAP_I33A0 NCAP_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).		[[http://www.uniprot.org/uniprot/Q1K9H2_I33A0 Q1K9H2_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).[SAAS:SAAS002141_004_603280] [[http://www.uniprot.org/uniprot/NCAP_I33A0 NCAP_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The influenza virus genome consists of eight viral ribonucleoproteins (vRNPs), each consisting of a copy of the polymerase, one of the genomic RNA segments and multiple copies of the nucleoprotein arranged in a double helical conformation. vRNPs are macromolecular machines responsible for messenger RNA synthesis and genome replication, that is, the formation of progeny vRNPs. Here, we describe the structural basis of the transcription process. The mechanism, which we call the 'processive helical track', is based on the extreme flexibility of the helical part of the vRNP that permits a sliding movement between both antiparallel nucleoprotein-RNA strands, thereby allowing the polymerase to move over the genome while bound to both RNA ends. Accordingly, we demonstrate that blocking this movement leads to inhibition of vRNP transcriptional activity. This mechanism also reveals a critical role of the nucleoprotein in maintaining the double helical structure throughout the copying process to make the RNA template accessible to the polymerase.
		+
		+	Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism.,Coloma R, Arranz R, de la Rosa-Trevin JM, Sorzano COS, Munier S, Carlero D, Naffakh N, Ortin J, Martin-Benito J Nat Microbiol. 2020 Mar 9. pii: 10.1038/s41564-020-0675-3. doi:, 10.1038/s41564-020-0675-3. PMID:32152587<ref>PMID:32152587</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6i7b" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</SX>		</SX>

OCA at 22:01, 6 March 2020

OCA — Fri, 06 Mar 2020 22:01:19 GMT

←Older revision		Revision as of 22:01, 6 March 2020
Line 1:		Line 1:

	==Influenza A nucleoprotein docked into 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 3.==		==Influenza A nucleoprotein docked into 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 3.==
-	<~~StructureSection~~ load='6i7b' size='340' side='right'caption='[[6i7b]], [[Resolution\|resolution]] 10.00Å' scene=''>	+	<SX load='6i7b' size='340' side='right' viewer='molstar' caption='[[6i7b]], [[Resolution\|resolution]] 10.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6i7b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/wilson-smith/1933(h1n1)) Influenza a virus (a/wilson-smith/1933(h1n1))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I7B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6I7B FirstGlance]. <br>		<table><tr><td colspan='2'>[[6i7b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/wilson-smith/1933(h1n1)) Influenza a virus (a/wilson-smith/1933(h1n1))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I7B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6I7B FirstGlance]. <br>
Line 9:		Line 9:
	[[http://www.uniprot.org/uniprot/Q1K9H2_I33A0 Q1K9H2_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).[SAAS:SAAS002141_004_603280] [[http://www.uniprot.org/uniprot/NCAP_I33A0 NCAP_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).		[[http://www.uniprot.org/uniprot/Q1K9H2_I33A0 Q1K9H2_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).[SAAS:SAAS002141_004_603280] [[http://www.uniprot.org/uniprot/NCAP_I33A0 NCAP_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Arranz, R]]		[[Category: Arranz, R]]

OCA at 06:17, 19 February 2020

OCA — Wed, 19 Feb 2020 06:17:07 GMT

←Older revision		Revision as of 06:17, 19 February 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6i7b ~~is ON HOLD~~	+	==Influenza A nucleoprotein docked into 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 3.==
-		+	<StructureSection load='6i7b' size='340' side='right'caption='[[6i7b]], [[Resolution\|resolution]] 10.00Å' scene=''>
-	~~Authors~~: ~~Coloma~~, R., ~~Arranz~~, R., ~~de la Rosa~~-~~Trevin~~, J.M., ~~Sorzano~~, C.O.S., ~~Carlero~~, D., ~~Ortin~~, J., ~~Martin~~-~~Benito, J~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6i7b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/wilson-smith/1933(h1n1)) Influenza a virus (a/wilson-smith/1933(h1n1))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I7B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6I7B FirstGlance]. <br>
-	~~Description: Influenza A~~ nucleoprotein ~~docked into 3D helical structure~~ of the ~~wild type ribonucleoprotein complex obtained using cryoEM~~. ~~Conformation 3~~.	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6i7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i7b OCA], [http://pdbe.org/6i7b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6i7b RCSB], [http://www.ebi.ac.uk/pdbsum/6i7b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6i7b ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q1K9H2_I33A0 Q1K9H2_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).[SAAS:SAAS002141_004_603280] [[http://www.uniprot.org/uniprot/NCAP_I33A0 NCAP_I33A0]] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Arranz, R]]
		+	[[Category: Carlero, D]]
	[[Category: Coloma, R]]		[[Category: Coloma, R]]
	[[Category: Martin-Benito, J]]		[[Category: Martin-Benito, J]]
-	[[Category: Carlero, D]]
	[[Category: Ortin, J]]		[[Category: Ortin, J]]
-	[[Category: Sorzano, C.O.S]]	+	[[Category: Rosa-Trevin, J M.de la]]
-	[[Category: ~~De La Rosa-Trevin, J.M~~]]	+	[[Category: Sorzano, C O.S]]
-	[[Category: ~~Arranz, R~~]]	+	[[Category: Influenza a virus]]
		+	[[Category: Ribonucleoprotein]]
		+	[[Category: Rna binding protein]]
		+	[[Category: Viral protein]]

OCA: Protected "6i7b" [edit=sysop:move=sysop]

OCA — Sun, 02 Dec 2018 18:41:05 GMT

Protected "6i7b" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:41, 2 December 2018

OCA: New page: '''Unreleased structure''' The entry 6i7b is ON HOLD Authors: Coloma, R., Arranz, R., de la Rosa-Trevin, J.M., Sorzano, C.O.S., Carlero, D., Ortin, J., Martin-Benito, J. Description: I...

OCA — Sun, 02 Dec 2018 18:41:03 GMT

New page: '''Unreleased structure''' The entry 6i7b is ON HOLD Authors: Coloma, R., Arranz, R., de la Rosa-Trevin, J.M., Sorzano, C.O.S., Carlero, D., Ortin, J., Martin-Benito, J. Description: I...

New page

'''Unreleased structure'''

The entry 6i7b is ON HOLD

Authors: Coloma, R., Arranz, R., de la Rosa-Trevin, J.M., Sorzano, C.O.S., Carlero, D., Ortin, J., Martin-Benito, J.

Description: Influenza A nucleoprotein docked into 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 3.
[[Category: Unreleased Structures]]
[[Category: Coloma, R]]
[[Category: Martin-Benito, J]]
[[Category: Carlero, D]]
[[Category: Ortin, J]]
[[Category: Sorzano, C.O.S]]
[[Category: De La Rosa-Trevin, J.M]]
[[Category: Arranz, R]]