6iei - Revision history

OCA at 09:39, 22 November 2023

OCA — Wed, 22 Nov 2023 09:39:43 GMT

←Older revision		Revision as of 09:39, 22 November 2023
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	<StructureSection load='6iei' size='340' side='right'caption='[[6iei]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='6iei' size='340' side='right'caption='[[6iei]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6iei]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Borbu Borbu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IEI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6IEI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6iei]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Borreliella_burgdorferi_B31 Borreliella burgdorferi B31]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IEI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IEI FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~ospA~~, ~~BB_A15 (~~[~~http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=224326 BORBU])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6iei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iei OCA], [~~http~~://pdbe.org/6iei PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6iei RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6iei PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6iei ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6iei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iei OCA], [https://pdbe.org/6iei PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6iei RCSB], [https://www.ebi.ac.uk/pdbsum/6iei PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6iei ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/OSPA_BORBU OSPA_BORBU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 16:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 6iei" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6iei" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Outer surface protein\|Outer surface protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Borbu~~]]	+	[[Category: Borreliella burgdorferi B31]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Makabe, K]]	+	[[Category: Makabe K]]
-	[[Category: Shiga, S]]	+	[[Category: Shiga S]]
-	~~[[Category: De novo protein]]~~	+
-	~~[[Category: Lipid binding protein]]~~	+
-	~~[[Category: Ospa]]~~	+
-	~~[[Category: Outer surface protein some~~]]	+

OCA at 07:16, 16 October 2019

OCA — Wed, 16 Oct 2019 07:16:36 GMT

←Older revision		Revision as of 07:16, 16 October 2019
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	<StructureSection load='6iei' size='340' side='right'caption='[[6iei]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='6iei' size='340' side='right'caption='[[6iei]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6iei]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IEI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IEI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6iei]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Borbu Borbu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IEI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IEI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6iei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iei OCA], [http://pdbe.org/6iei PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6iei RCSB], [http://www.ebi.ac.uk/pdbsum/6iei PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6iei ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA, BB_A15 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224326 BORBU])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6iei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iei OCA], [http://pdbe.org/6iei PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6iei RCSB], [http://www.ebi.ac.uk/pdbsum/6iei PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6iei ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Borbu]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Makabe, K]]		[[Category: Makabe, K]]

OCA at 05:49, 3 July 2019

OCA — Wed, 03 Jul 2019 05:49:32 GMT

←Older revision		Revision as of 05:49, 3 July 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6iei is ~~ON HOLD until Paper~~ Publication	+	==Loop deletion and proline insertion mutant (deleting six residues and inserted five proline residues)==
		+	<StructureSection load='6iei' size='340' side='right'caption='[[6iei]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6iei]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IEI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IEI FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6iei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iei OCA], [http://pdbe.org/6iei PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6iei RCSB], [http://www.ebi.ac.uk/pdbsum/6iei PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6iei ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In "domain-swapping," proteins mutually interconvert structural elements to form a dimer/oligomer. Engineering this process by design is important for creating a higher order protein assembly with minimal modification. Herein, we show a simple design strategy for domain-swapping formation by loop deletion and insertion of a polyproline rod. Crystal structures revealed the formation of the domain-swapped dimers and the polyproline portion formed a polyproline II (PPII) structure. Small-angle x-ray scattering (SAXS) demonstrated that an extended orientation of domain-swapped dimer was retained in the solution. We found that a multiple of three of inserting proline residue is favored for domain-swapping because of the helical nature of PPII. The rigid nature of the polyproline rod enables precise control of the interdomain distance and orientation.

-	~~Authors~~:	+	Domain-swapping design by poly-proline rod insertion.,Shiga S, Yamanaka M, Fujiwara W, Hirota S, Goda S, Makabe K Chembiochem. 2019 May 15. doi: 10.1002/cbic.201900179. PMID:31094059<ref>PMID:31094059</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6iei" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Makabe, K]]
		+	[[Category: Shiga, S]]
		+	[[Category: De novo protein]]
		+	[[Category: Lipid binding protein]]
		+	[[Category: Ospa]]
		+	[[Category: Outer surface protein some]]

OCA at 04:54, 21 February 2019

OCA — Thu, 21 Feb 2019 04:54:31 GMT

←Older revision		Revision as of 04:54, 21 February 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6iei is ON HOLD	+	The entry 6iei is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 10:21, 16 January 2019

OCA — Wed, 16 Jan 2019 10:21:00 GMT

←Older revision		Revision as of 10:21, 16 January 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6iei is ON HOLD ~~until Paper Publication~~	+	The entry 6iei is ON HOLD

	Authors:		Authors:

OCA at 06:19, 3 October 2018

OCA — Wed, 03 Oct 2018 06:19:32 GMT

←Older revision		Revision as of 06:19, 3 October 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6iei is ON HOLD	+	The entry 6iei is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6iei" [edit=sysop:move=sysop]

OCA — Wed, 19 Sep 2018 18:20:50 GMT

Protected "6iei" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:20, 19 September 2018

OCA: New page: '''Unreleased structure''' The entry 6iei is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 19 Sep 2018 18:20:49 GMT

New page: '''Unreleased structure''' The entry 6iei is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6iei is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]