6ijf - Revision history

OCA at 09:43, 22 November 2023

OCA — Wed, 22 Nov 2023 09:43:55 GMT

←Older revision		Revision as of 09:43, 22 November 2023
Line 1:		Line 1:

	==Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens==		==Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens==
-	<StructureSection load='6ijf' size='340' side='right' caption='[[6ijf]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='6ijf' size='340' side='right'caption='[[6ijf]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ijf]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IJF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6IJF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ijf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IJF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IJF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6ijf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ijf OCA], [~~http~~://pdbe.org/6ijf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6ijf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6ijf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6ijf ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ijf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ijf OCA], [https://pdbe.org/6ijf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ijf RCSB], [https://www.ebi.ac.uk/pdbsum/6ijf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ijf ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A083ZID3_RHIRD A0A083ZID3_RHIRD]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Fukuhara, S~~]]	+	[[Category: Agrobacterium tumefaciens]]
-	[[Category: ~~Ishii, R~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Ishitani, R~~]]	+	[[Category: Fukuhara S]]
-	[[Category: ~~Nakane, T~~]]	+	[[Category: Ishii R]]
-	[[Category: ~~Nureki, O~~]]	+	[[Category: Ishitani R]]
-	[[Category: ~~Yamashita, K~~]]	+	[[Category: Nakane T]]
-	[[Category: ~~Antitoxin~~]]	+	[[Category: Nureki O]]
-	[[Category: ~~Complex~~]]	+	[[Category: Yamashita K]]

OCA at 08:32, 19 December 2018

OCA — Wed, 19 Dec 2018 08:32:36 GMT

←Older revision		Revision as of 08:32, 19 December 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6ijf is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens==
		+	<StructureSection load='6ijf' size='340' side='right' caption='[[6ijf]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6ijf]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IJF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IJF FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ijf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ijf OCA], [http://pdbe.org/6ijf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ijf RCSB], [http://www.ebi.ac.uk/pdbsum/6ijf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ijf ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The type VI secretion system (T6SS) comprises needle-shaped multisubunit complexes that play a role in the microbial defense systems of Gram-negative bacteria. Some Gram-negative bacteria harboring a T6SS deliver toxic effector proteins into the cytoplasm or periplasm of competing bacteria in order to lyse and kill them. To avoid self-cell disruption, these bacteria have cognate immunity proteins that inhibit their toxic effector proteins. T6SS amidase effector protein 4 (Tae4) and T6SS amidase immunity protein 4 (Tai4) are a representative of the toxic effector-immunity pairs of the T6SS. Here, the three-dimensional structures of Tai4 and the Tae4-Tai4 complex from Agrobacterium tumefaciens are reported at 1.55 and 1.9 A resolution, respectively. A structural comparison with other Tae4-Tai4 homologs revealed similarities and differences in the catalytic and inhibitory mechanisms among the Tae4 and Tai4 family proteins.

-	~~Authors: Fukuhara~~, S., Nakane, T., Yamashita, K., Ishii, R., Ishitani, R., Nureki, O.	+	Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.,Fukuhara S, Nakane T, Yamashita K, Ishii R, Ishitani R, Nureki O Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):810-816. doi:, 10.1107/S2053230X18016369. Epub 2018 Nov 30. PMID:30511676<ref>PMID:30511676</ref>

-	~~Description: Crystal structure~~ of the ~~type VI effector~~-~~immunity complex (Tae4~~-~~Tai4) from Agrobacterium tumefaciens~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: ~~Nureki~~, O]]	+	<div class="pdbe-citations 6ijf" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Fukuhara, S]]
	[[Category: Ishii, R]]		[[Category: Ishii, R]]
	[[Category: Ishitani, R]]		[[Category: Ishitani, R]]
	[[Category: Nakane, T]]		[[Category: Nakane, T]]
		+	[[Category: Nureki, O]]
	[[Category: Yamashita, K]]		[[Category: Yamashita, K]]
-	[[Category: ~~Fukuhara, S~~]]	+	[[Category: Antitoxin]]
		+	[[Category: Complex]]

OCA at 18:49, 2 December 2018

OCA — Sun, 02 Dec 2018 18:49:34 GMT

←Older revision		Revision as of 18:49, 2 December 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ijf is ON HOLD	+	The entry 6ijf is ON HOLD until Paper Publication

	Authors: Fukuhara, S., Nakane, T., Yamashita, K., Ishii, R., Ishitani, R., Nureki, O.		Authors: Fukuhara, S., Nakane, T., Yamashita, K., Ishii, R., Ishitani, R., Nureki, O.
Line 9:		Line 9:
	[[Category: Nureki, O]]		[[Category: Nureki, O]]
	[[Category: Ishii, R]]		[[Category: Ishii, R]]
		+	[[Category: Ishitani, R]]
	[[Category: Nakane, T]]		[[Category: Nakane, T]]
	[[Category: Yamashita, K]]		[[Category: Yamashita, K]]
	[[Category: Fukuhara, S]]		[[Category: Fukuhara, S]]
-	[[Category: Ishitani, R]]

OCA: Protected "6ijf" [edit=sysop:move=sysop]

OCA — Wed, 17 Oct 2018 06:26:58 GMT

Protected "6ijf" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:26, 17 October 2018

OCA: New page: '''Unreleased structure''' The entry 6ijf is ON HOLD Authors: Fukuhara, S., Nakane, T., Yamashita, K., Ishii, R., Ishitani, R., Nureki, O. Description: Crystal structure of the type VI...

OCA — Wed, 17 Oct 2018 06:26:56 GMT

New page: '''Unreleased structure''' The entry 6ijf is ON HOLD Authors: Fukuhara, S., Nakane, T., Yamashita, K., Ishii, R., Ishitani, R., Nureki, O. Description: Crystal structure of the type VI...

New page

'''Unreleased structure'''

The entry 6ijf is ON HOLD

Authors: Fukuhara, S., Nakane, T., Yamashita, K., Ishii, R., Ishitani, R., Nureki, O.

Description: Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens
[[Category: Unreleased Structures]]
[[Category: Nureki, O]]
[[Category: Ishii, R]]
[[Category: Nakane, T]]
[[Category: Yamashita, K]]
[[Category: Fukuhara, S]]
[[Category: Ishitani, R]]