6il0 - Revision history

OCA at 09:45, 22 November 2023

OCA — Wed, 22 Nov 2023 09:45:18 GMT

←Older revision		Revision as of 09:45, 22 November 2023
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	<StructureSection load='6il0' size='340' side='right'caption='[[6il0]], [[Resolution\|resolution]] 1.93Å' scene=''>		<StructureSection load='6il0' size='340' side='right'caption='[[6il0]], [[Resolution\|resolution]] 1.93Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6il0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IL0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6IL0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6il0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_KACC_10331 Xanthomonas oryzae pv. oryzae KACC 10331]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IL0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IL0 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=K3U:S~~-~~(2-oxo-2-phenylethyl)+(2R)-2-benzyl-4~~,~~4,4-trifluorobutanethioate'>K3U</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.93Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=K3U:S-(2-oxo-2-phenylethyl)+(2R)-2-benzyl-4,4,4-trifluorobutanethioate'>K3U</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6il0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6il0 OCA], [https://pdbe.org/6il0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6il0 RCSB], [https://www.ebi.ac.uk/pdbsum/6il0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6il0 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6il0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6il0 OCA], [~~http~~://pdbe.org/6il0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6il0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6il0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6il0 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]	+	[https://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Peptide deformylase~~]]	+	[[Category: Xanthomonas oryzae pv. oryzae KACC 10331]]
-	[[Category: Kang~~, L W~~]]	+	[[Category: Kang LW]]
-	[[Category: Lee~~, I H]]~~	+	[[Category: Lee IH]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 06:46, 23 October 2019

OCA — Wed, 23 Oct 2019 06:46:33 GMT

←Older revision		Revision as of 06:46, 23 October 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6il0 is ~~ON HOLD until Paper Publication~~	+	==K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae==
-		+	<StructureSection load='6il0' size='340' side='right'caption='[[6il0]], [[Resolution\|resolution]] 1.93Å' scene=''>
-	~~Authors~~: ~~Lee~~, I.H., ~~Kang~~, L.W.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6il0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IL0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IL0 FirstGlance]. <br>
-	~~Description~~: ~~K3U complex structure~~ of ~~peptide deformylase from Xanthomonas oryzae pv~~. ~~oryzae~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K3U:S-(2-oxo-2-phenylethyl)+(2R)-2-benzyl-4,4,4-trifluorobutanethioate'>K3U</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
-	[[Category: Kang, L.W]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
-	[[Category: Lee, I.H]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6il0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6il0 OCA], [http://pdbe.org/6il0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6il0 RCSB], [http://www.ebi.ac.uk/pdbsum/6il0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6il0 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Peptide deformylase]]
		+	[[Category: Kang, L W]]
		+	[[Category: Lee, I H]]
		+	[[Category: Hydrolase]]

OCA at 18:50, 2 December 2018

OCA — Sun, 02 Dec 2018 18:50:10 GMT

←Older revision		Revision as of 18:50, 2 December 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6il0 is ON HOLD	+	The entry 6il0 is ON HOLD until Paper Publication

	Authors: Lee, I.H., Kang, L.W.		Authors: Lee, I.H., Kang, L.W.
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	Description: K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae		Description: K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Lee, I.H]]
	[[Category: Kang, L.W]]		[[Category: Kang, L.W]]
		+	[[Category: Lee, I.H]]

OCA: Protected "6il0" [edit=sysop:move=sysop]

OCA — Wed, 24 Oct 2018 04:23:50 GMT

Protected "6il0" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:23, 24 October 2018

OCA: New page: '''Unreleased structure''' The entry 6il0 is ON HOLD Authors: Lee, I.H., Kang, L.W. Description: K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae [[Categ...

OCA — Wed, 24 Oct 2018 04:23:47 GMT

New page: '''Unreleased structure''' The entry 6il0 is ON HOLD Authors: Lee, I.H., Kang, L.W. Description: K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae [[Categ...

New page

'''Unreleased structure'''

The entry 6il0 is ON HOLD

Authors: Lee, I.H., Kang, L.W.

Description: K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
[[Category: Unreleased Structures]]
[[Category: Lee, I.H]]
[[Category: Kang, L.W]]