6izr - Revision history

OCA at 19:26, 29 May 2024

OCA — Wed, 29 May 2024 19:26:52 GMT

←Older revision		Revision as of 19:26, 29 May 2024
Line 3:		Line 3:
	<SX load='6izr' size='340' side='right' viewer='molstar' caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>		<SX load='6izr' size='340' side='right' viewer='molstar' caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Clostridium_botulinum_prevot_594~~ Clostridium botulinum ~~prevot_594~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IZR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum_Prevot_594 Clostridium botulinum Prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IZR FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 4.7Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~T258_3831 ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=1408284 Clostridium botulinum Prevot_594])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [https://pdbe.org/6izr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [https://www.ebi.ac.uk/pdbsum/6izr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [https://pdbe.org/6izr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [https://www.ebi.ac.uk/pdbsum/6izr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>
	</table>		</table>
Line 21:		Line 21:
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: Clostridium botulinum ~~prevot_594~~]]	+	[[Category: Clostridium botulinum Prevot_594]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dandey~~, V P~~]]	+	[[Category: Dandey VP]]
-	[[Category: Koh, F]]	+	[[Category: Koh F]]
-	[[Category: Lee~~, L J~~]]	+	[[Category: Lee LJ]]
-	[[Category: Narita, A]]	+	[[Category: Narita A]]
-	[[Category: Popp, D]]	+	[[Category: Popp D]]
-	[[Category: Robinson~~, R C~~]]	+	[[Category: Robinson RC]]
-	[[Category: Tan~~, Y Z~~]]	+	[[Category: Tan YZ]]
-	[[Category: Tanaka, K]]	+	[[Category: Tanaka K]]
-	~~[[Category: Cytoskeleton]]~~	+
-	~~[[Category: Filament]]~~	+
-	~~[[Category: Parm]]~~	+
-	~~[[Category: Protein fibril~~]]	+

OCA at 11:42, 23 March 2022

OCA — Wed, 23 Mar 2022 11:42:51 GMT

←Older revision		Revision as of 11:42, 23 March 2022
Line 3:		Line 3:
	<SX load='6izr' size='340' side='right' viewer='molstar' caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>		<SX load='6izr' size='340' side='right' viewer='molstar' caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Clostridium_botulinum_prevot_594 Clostridium botulinum prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6IZR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum_prevot_594 Clostridium botulinum prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IZR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">T258_3831 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1408284 Clostridium botulinum Prevot_594])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">T258_3831 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1408284 Clostridium botulinum Prevot_594])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [~~http~~://pdbe.org/6izr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6izr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [https://pdbe.org/6izr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [https://www.ebi.ac.uk/pdbsum/6izr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:54, 11 April 2020

OCA — Sat, 11 Apr 2020 01:54:37 GMT

←Older revision		Revision as of 01:54, 11 April 2020
Line 3:		Line 3:
	<SX load='6izr' size='340' side='right' viewer='molstar' caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>		<SX load='6izr' size='340' side='right' viewer='molstar' caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum_prevot_594 Clostridium botulinum prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6IZR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum_prevot_594 Clostridium botulinum prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6IZR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">T258_3831 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1408284 Clostridium botulinum Prevot_594])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">T258_3831 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1408284 Clostridium botulinum Prevot_594])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [http://pdbe.org/6izr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [http://www.ebi.ac.uk/pdbsum/6izr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [http://pdbe.org/6izr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [http://www.ebi.ac.uk/pdbsum/6izr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:11, 6 March 2020

OCA — Fri, 06 Mar 2020 22:11:54 GMT

←Older revision		Revision as of 22:11, 6 March 2020
Line 1:		Line 1:

	==Whole structure of a 15-stranded ParM filament from Clostridium botulinum==		==Whole structure of a 15-stranded ParM filament from Clostridium botulinum==
-	<~~StructureSection~~ load='6izr' size='340' side='right'caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>	+	<SX load='6izr' size='340' side='right' viewer='molstar' caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum_prevot_594 Clostridium botulinum prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IZR FirstGlance]. <br>		<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum_prevot_594 Clostridium botulinum prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IZR FirstGlance]. <br>
Line 20:		Line 20:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Clostridium botulinum prevot_594]]		[[Category: Clostridium botulinum prevot_594]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 06:25, 10 July 2019

OCA — Wed, 10 Jul 2019 06:25:47 GMT

←Older revision		Revision as of 06:25, 10 July 2019
Line 3:		Line 3:
	<StructureSection load='6izr' size='340' side='right'caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>		<StructureSection load='6izr' size='340' side='right'caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IZR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum_prevot_594 Clostridium botulinum prevot_594]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IZR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">T258_3831 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1408284 Clostridium botulinum Prevot_594])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [http://pdbe.org/6izr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [http://www.ebi.ac.uk/pdbsum/6izr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [http://pdbe.org/6izr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [http://www.ebi.ac.uk/pdbsum/6izr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Microfilaments (actin) and microtubules represent the extremes in eukaryotic cytoskeleton cross-sectional dimensions, raising the question of whether filament architectures are limited by protein fold. Here, we report the cryoelectron microscopy structure of a complex filament formed from 15 protofilaments of an actin-like protein. This actin-like ParM is encoded on the large pCBH Clostridium botulinum plasmid. In cross-section, the ~26 nm diameter filament comprises a central helical protofilament surrounded by intermediate and outer layers of six and eight twisted protofilaments, respectively. Alternating polarity of the layers allows for similar lateral contacts between each layer. This filament design is stiffer than the actin filament, and has likely been selected for during evolution to move large cargos. The comparable sizes of microtubule and pCBH ParM filaments indicate that larger filament architectures are not limited by the protomer fold. Instead, function appears to have been the evolutionary driving force to produce broad, complex filaments.
		+
		+	The structure of a 15-stranded actin-like filament from Clostridium botulinum.,Koh F, Narita A, Lee LJ, Tanaka K, Tan YZ, Dandey VP, Popp D, Robinson RC Nat Commun. 2019 Jun 28;10(1):2856. doi: 10.1038/s41467-019-10779-9. PMID:31253774<ref>PMID:31253774</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6izr" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Clostridium botulinum prevot_594]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Dandey, V P]]		[[Category: Dandey, V P]]

OCA at 05:56, 19 June 2019

OCA — Wed, 19 Jun 2019 05:56:07 GMT

←Older revision		Revision as of 05:56, 19 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6izr ~~is ON HOLD~~	+	==Whole structure of a 15-stranded ParM filament from Clostridium botulinum==
-		+	<StructureSection load='6izr' size='340' side='right'caption='[[6izr]], [[Resolution\|resolution]] 4.70Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6izr]] is a 30 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IZR FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6izr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6izr OCA], [http://pdbe.org/6izr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6izr RCSB], [http://www.ebi.ac.uk/pdbsum/6izr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6izr ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Dandey, V P]]
		+	[[Category: Koh, F]]
		+	[[Category: Lee, L J]]
		+	[[Category: Narita, A]]
		+	[[Category: Popp, D]]
		+	[[Category: Robinson, R C]]
		+	[[Category: Tan, Y Z]]
		+	[[Category: Tanaka, K]]
		+	[[Category: Cytoskeleton]]
		+	[[Category: Filament]]
		+	[[Category: Parm]]
		+	[[Category: Protein fibril]]

OCA: Protected "6izr" [edit=sysop:move=sysop]

OCA — Wed, 26 Dec 2018 06:42:06 GMT

Protected "6izr" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:42, 26 December 2018

OCA: New page: '''Unreleased structure''' The entry 6izr is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 26 Dec 2018 06:42:04 GMT

New page: '''Unreleased structure''' The entry 6izr is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6izr is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]