6jbv - Revision history

OCA at 09:32, 15 September 2021

OCA — Wed, 15 Sep 2021 09:32:20 GMT

←Older revision		Revision as of 09:32, 15 September 2021
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	<StructureSection load='6jbv' size='340' side='right'caption='[[6jbv]], [[Resolution\|resolution]] 1.71Å' scene=''>		<StructureSection load='6jbv' size='340' side='right'caption='[[6jbv]], [[Resolution\|resolution]] 1.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jbv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JBV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JBV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jbv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacrg Lacrg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JBV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JBV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jbv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jbv OCA], [~~http~~://pdbe.org/6jbv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jbv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jbv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jbv ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DU507_12320 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=568703 LACRG])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jbv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jbv OCA], [https://pdbe.org/6jbv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jbv RCSB], [https://www.ebi.ac.uk/pdbsum/6jbv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jbv ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 6jbv" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6jbv" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Pilin 3D structures\|Pilin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lacrg]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Krishnan, V]]		[[Category: Krishnan, V]]

OCA at 06:52, 26 June 2019

OCA — Wed, 26 Jun 2019 06:52:52 GMT

←Older revision		Revision as of 06:52, 26 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6jbv is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG - Selenium derivative==
		+	<StructureSection load='6jbv' size='340' side='right'caption='[[6jbv]], [[Resolution\|resolution]] 1.71Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6jbv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JBV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JBV FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jbv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jbv OCA], [http://pdbe.org/6jbv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jbv RCSB], [http://www.ebi.ac.uk/pdbsum/6jbv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jbv ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	For some Gram-positive genera and species, the long-extended and adhesive sortase-dependent pilus plays an essential role during host colonization, biofilm formation, and immune modulation. Lactobacillus rhamnosus GG is a gut-adapted commensal strain that harbors the operonic genes for the SpaCBA and SpaFED pili, both being comprised of three different protein subunits termed the backbone, tip, and basal pilins. Crystal structures of the backbone pilins (SpaA and SpaD) have recently been solved, and here we describe the high-resolution (1.5A) structural determination of the SpaE basal pilin. SpaE consists of two immunoglobulin-like CnaB domains, with each displaying a spontaneously formed internal isopeptide bond, though apparently slow forming in the N-terminal domain. Remarkably, SpaE contains an atypically lengthy unstructured C-terminal tail, along with an YPKN pilin motif peptide, which is normally reserved for backbone subunits. Based on our analysis of the crystal structure data, we provide a molecular model for the basal positioning of the SpaE pilin within the SpaFED pilus.

-	~~Authors: Megta, A.K~~., Mishra~~, A.K.~~, Palva, A., von Ossowski, I., Krishnan, V.	+	Crystal structure of basal pilin SpaE reveals the molecular basis of its incorporation in the lactobacillar SpaFED pilus.,Megta AK, Mishra AK, Palva A, von Ossowski I, Krishnan V J Struct Biol. 2019 Jul 1;207(1):74-84. doi: 10.1016/j.jsb.2019.04.016. Epub 2019, Apr 23. PMID:31026587<ref>PMID:31026587</ref>

-	~~Description: Crystal structure~~ of ~~SpaE basal pilin from Lactobacillus rhamnosus GG~~ -~~Selenium derivative~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6jbv" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Krishnan, V]]		[[Category: Krishnan, V]]
-	[[Category: Mishra, A.K]]	+	[[Category: Megta, A K]]
		+	[[Category: Mishra, A K]]
		+	[[Category: Ossowski, I von]]
	[[Category: Palva, A]]		[[Category: Palva, A]]
-	[[Category: ~~Von Ossowski, I~~]]	+	[[Category: Basal pilin]]
-	[[Category: ~~Megta, A.K~~]]	+	[[Category: Cell adhesion]]
		+	[[Category: Isopeptide bond]]
		+	[[Category: Pilus anchoring]]
		+	[[Category: Probiotic]]
		+	[[Category: Spafed pilus]]
		+	[[Category: Surface protein]]

OCA at 09:59, 13 March 2019

OCA — Wed, 13 Mar 2019 09:59:11 GMT

←Older revision		Revision as of 09:59, 13 March 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jbv is ON HOLD	+	The entry 6jbv is ON HOLD until Paper Publication

	Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V.		Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V.

OCA: Protected "6jbv" [edit=sysop:move=sysop]

OCA — Wed, 13 Feb 2019 07:19:52 GMT

Protected "6jbv" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:19, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6jbv is ON HOLD Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V. Description: Crystal structure of SpaE basal pilin fr...

OCA — Wed, 13 Feb 2019 07:19:51 GMT

New page: '''Unreleased structure''' The entry 6jbv is ON HOLD Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V. Description: Crystal structure of SpaE basal pilin fr...

New page

'''Unreleased structure'''

The entry 6jbv is ON HOLD

Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V.

Description: Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG -Selenium derivative
[[Category: Unreleased Structures]]
[[Category: Krishnan, V]]
[[Category: Mishra, A.K]]
[[Category: Palva, A]]
[[Category: Von Ossowski, I]]
[[Category: Megta, A.K]]