6jc4 - Revision history

OCA at 19:27, 29 May 2024

OCA — Wed, 29 May 2024 19:27:01 GMT

←Older revision		Revision as of 19:27, 29 May 2024
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	<StructureSection load='6jc4' size='340' side='right'caption='[[6jc4]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='6jc4' size='340' side='right'caption='[[6jc4]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jc4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus~~ pneumoniae~~" (schroeter 1886) flugge 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JC4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JC4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jc4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JC4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JC4 FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~ureF~~, ~~ureF_1, ureF_2, NCTC204_02890, NCTC5052_03968, NCTC8849_05426, NCTC9637_01222, NCTC9661_01459, SAMEA104305404_01442, SAMEA24002668_02244 (~~[~~https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=573 "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jc4 OCA], [https://pdbe.org/6jc4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jc4 RCSB], [https://www.ebi.ac.uk/pdbsum/6jc4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jc4 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jc4 OCA], [https://pdbe.org/6jc4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jc4 RCSB], [https://www.ebi.ac.uk/pdbsum/6jc4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jc4 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~A0A2X3G2L5_KLEPN A0A2X3G2L5_KLEPN]~~] Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.[HAMAP-Rule:MF_01385~~][SAAS:SAAS00101010~~]	+	[https://www.uniprot.org/uniprot/UREF_KLEP7 UREF_KLEP7] Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.[HAMAP-Rule:MF_01385]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 20:

	==See Also==		==See Also==
-	*[[Urease accessory protein\|Urease accessory protein]]	+	*[[Urease accessory protein 3D structures\|Urease accessory protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Klebsiella pneumoniae]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bartlam, M]]	+	[[Category: Bartlam M]]
-	[[Category: Wu, W]]	+	[[Category: Wu W]]
-	[[Category: Zhang, Q]]	+	[[Category: Zhang Q]]
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Nickel-binding]]~~	+
-	~~[[Category: Urease accessory protein~~]]	+

OCA at 07:29, 9 February 2022

OCA — Wed, 09 Feb 2022 07:29:02 GMT

←Older revision		Revision as of 07:29, 9 February 2022
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	<StructureSection load='6jc4' size='340' side='right'caption='[[6jc4]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='6jc4' size='340' side='right'caption='[[6jc4]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jc4]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JC4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JC4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jc4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus pneumoniae" (schroeter 1886) flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JC4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JC4 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jc4 OCA], [~~http~~://pdbe.org/6jc4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jc4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jc4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jc4 ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ureF, ureF_1, ureF_2, NCTC204_02890, NCTC5052_03968, NCTC8849_05426, NCTC9637_01222, NCTC9661_01459, SAMEA104305404_01442, SAMEA24002668_02244 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=573 "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jc4 OCA], [https://pdbe.org/6jc4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jc4 RCSB], [https://www.ebi.ac.uk/pdbsum/6jc4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jc4 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/A0A2X3G2L5_KLEPN A0A2X3G2L5_KLEPN]] Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.[HAMAP-Rule:MF_01385][SAAS:SAAS00101010]	+	[[https://www.uniprot.org/uniprot/A0A2X3G2L5_KLEPN A0A2X3G2L5_KLEPN]] Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.[HAMAP-Rule:MF_01385][SAAS:SAAS00101010]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Klebsiella pneumoniae is an opportunistic pathogen that mostly affects those with weakened immune systems. Urease is a vital enzyme that can hydrolyze urea to ammonia and carbon dioxide as a source of nitrogen for growth. Urease is also a K. pneumoniae virulence factor that enables survival of the bacterium under nutrient-limiting conditions. UreF, an important nickel-binding urease accessory protein, is involved in the insertion of Ni(2+) into the active site of urease. Here, the crystal structure of UreF from K. pneumoniae (KpUreF) is reported. Functional data show that KpUreF forms a stable dimer in solution. These results may provide a starting point for the design of urease inhibitors.
		+
		+	Structural characterization of the urease accessory protein UreF from Klebsiella pneumoniae.,Liu S, Wu W, Zhao Q, Liang H, Che S, Zhang H, Liu R, Zhang Q, Bartlam M Acta Crystallogr F Struct Biol Commun. 2022 Feb 1;78(Pt 2):75-80. doi:, 10.1107/S2053230X22000474. Epub 2022 Jan 31. PMID:35102896<ref>PMID:35102896</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6jc4" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Urease accessory protein\|Urease accessory protein]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 15:27, 29 January 2020

OCA — Wed, 29 Jan 2020 15:27:08 GMT

←Older revision		Revision as of 15:27, 29 January 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6jc4 ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of the urease accessory protein UreF from Klebsiella pneumoniae==
-		+	<StructureSection load='6jc4' size='340' side='right'caption='[[6jc4]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6jc4]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JC4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JC4 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jc4 OCA], [http://pdbe.org/6jc4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jc4 RCSB], [http://www.ebi.ac.uk/pdbsum/6jc4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jc4 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/A0A2X3G2L5_KLEPN A0A2X3G2L5_KLEPN]] Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.[HAMAP-Rule:MF_01385][SAAS:SAAS00101010]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Bartlam, M]]
		+	[[Category: Wu, W]]
		+	[[Category: Zhang, Q]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Nickel-binding]]
		+	[[Category: Urease accessory protein]]

OCA at 05:25, 6 March 2019

OCA — Wed, 06 Mar 2019 05:25:07 GMT

←Older revision		Revision as of 05:25, 6 March 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jc4 is ON HOLD	+	The entry 6jc4 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6jc4" [edit=sysop:move=sysop]

OCA — Wed, 13 Feb 2019 07:20:56 GMT

Protected "6jc4" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:20, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6jc4 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 13 Feb 2019 07:20:54 GMT

New page: '''Unreleased structure''' The entry 6jc4 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6jc4 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]