6jch - Revision history

OCA at 10:06, 22 November 2023

OCA — Wed, 22 Nov 2023 10:06:29 GMT

←Older revision		Revision as of 10:06, 22 November 2023
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	<StructureSection load='6jch' size='340' side='right'caption='[[6jch]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='6jch' size='340' side='right'caption='[[6jch]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jch]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Lacrg Lacrg~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JCH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jch]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacticaseibacillus_rhamnosus_GG Lacticaseibacillus rhamnosus GG]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JCH FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.536Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[6jbv\|6jbv]], [[6jk7\|6jk7]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">DU507_12320 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=568703 LACRG])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jch OCA], [https://pdbe.org/6jch PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jch RCSB], [https://www.ebi.ac.uk/pdbsum/6jch PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jch ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jch OCA], [https://pdbe.org/6jch PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jch RCSB], [https://www.ebi.ac.uk/pdbsum/6jch PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jch ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A5H1ZR38_LACRG A0A5H1ZR38_LACRG]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6jch" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6jch" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Pilin 3D structures\|Pilin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Lacrg~~]]	+	[[Category: Lacticaseibacillus rhamnosus GG]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Krishnan, V]]	+	[[Category: Krishnan V]]
-	[[Category: Megta~~, A K~~]]	+	[[Category: Megta AK]]
-	[[Category: Mishra~~, A K]]~~	+	[[Category: Mishra AK]]
-	~~[[Category: Ossowski, I von~~]]	+	[[Category: Palva A]]
-	[[Category: Palva, A]]	+	[[Category: Von Ossowski I]]
-	[[Category: ~~Basal pilin]]~~	+
-	~~[[Category: Cell adhesion]]~~	+
-	~~[[Category: Isopeptide bond]]~~	+
-	~~[[Category: Pilus anchoring]]~~	+
-	~~[[Category: Probiotic]]~~	+
-	~~[[Category: Sortase]]~~	+
-	~~[[Category: Spafed pilus]]~~	+
-	~~[[Category: Surface protein~~]]	+

OCA at 09:32, 15 September 2021

OCA — Wed, 15 Sep 2021 09:32:25 GMT

←Older revision		Revision as of 09:32, 15 September 2021
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	<StructureSection load='6jch' size='340' side='right'caption='[[6jch]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='6jch' size='340' side='right'caption='[[6jch]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jch]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JCH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jch]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacrg Lacrg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JCH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6jbv\|6jbv]], [[6jk7\|6jk7]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6jbv\|6jbv]], [[6jk7\|6jk7]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jch OCA], [~~http~~://pdbe.org/6jch PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jch RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jch PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jch ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DU507_12320 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=568703 LACRG])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jch OCA], [https://pdbe.org/6jch PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jch RCSB], [https://www.ebi.ac.uk/pdbsum/6jch PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jch ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lacrg]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Krishnan, V]]		[[Category: Krishnan, V]]

OCA at 06:52, 26 June 2019

OCA — Wed, 26 Jun 2019 06:52:54 GMT

←Older revision		Revision as of 06:52, 26 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6jch is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG - Orthorhombic form==
		+	<StructureSection load='6jch' size='340' side='right'caption='[[6jch]], [[Resolution\|resolution]] 1.54Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6jch]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JCH FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6jbv\|6jbv]], [[6jk7\|6jk7]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jch OCA], [http://pdbe.org/6jch PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jch RCSB], [http://www.ebi.ac.uk/pdbsum/6jch PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jch ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	For some Gram-positive genera and species, the long-extended and adhesive sortase-dependent pilus plays an essential role during host colonization, biofilm formation, and immune modulation. Lactobacillus rhamnosus GG is a gut-adapted commensal strain that harbors the operonic genes for the SpaCBA and SpaFED pili, both being comprised of three different protein subunits termed the backbone, tip, and basal pilins. Crystal structures of the backbone pilins (SpaA and SpaD) have recently been solved, and here we describe the high-resolution (1.5A) structural determination of the SpaE basal pilin. SpaE consists of two immunoglobulin-like CnaB domains, with each displaying a spontaneously formed internal isopeptide bond, though apparently slow forming in the N-terminal domain. Remarkably, SpaE contains an atypically lengthy unstructured C-terminal tail, along with an YPKN pilin motif peptide, which is normally reserved for backbone subunits. Based on our analysis of the crystal structure data, we provide a molecular model for the basal positioning of the SpaE pilin within the SpaFED pilus.

-	~~Authors: Megta, A.K~~., Mishra~~, A.K.~~, Palva, A., von Ossowski, I., Krishnan, V.	+	Crystal structure of basal pilin SpaE reveals the molecular basis of its incorporation in the lactobacillar SpaFED pilus.,Megta AK, Mishra AK, Palva A, von Ossowski I, Krishnan V J Struct Biol. 2019 Jul 1;207(1):74-84. doi: 10.1016/j.jsb.2019.04.016. Epub 2019, Apr 23. PMID:31026587<ref>PMID:31026587</ref>

-	~~Description: Crystal structure~~ of ~~SpaE basal pilin from Lactobacillus rhamnosus GG -Orthorhombic form~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Von Ossowski, I]]~~	+	<div class="pdbe-citations 6jch" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Megta, A.K~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Krishnan, V]]		[[Category: Krishnan, V]]
		+	[[Category: Megta, A K]]
		+	[[Category: Mishra, A K]]
		+	[[Category: Ossowski, I von]]
	[[Category: Palva, A]]		[[Category: Palva, A]]
-	[[Category: ~~Mishra, A.K~~]]	+	[[Category: Basal pilin]]
		+	[[Category: Cell adhesion]]
		+	[[Category: Isopeptide bond]]
		+	[[Category: Pilus anchoring]]
		+	[[Category: Probiotic]]
		+	[[Category: Sortase]]
		+	[[Category: Spafed pilus]]
		+	[[Category: Surface protein]]

OCA at 04:01, 19 June 2019

OCA — Wed, 19 Jun 2019 04:01:35 GMT

←Older revision		Revision as of 04:01, 19 June 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jch is ON HOLD	+	The entry 6jch is ON HOLD until Paper Publication

	Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V.		Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V.
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	Description: Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG -Orthorhombic form		Description: Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG -Orthorhombic form
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Krishnan, V]]
-	[[Category: Mishra, A.K]]
-	[[Category: Palva, A]]
	[[Category: Von Ossowski, I]]		[[Category: Von Ossowski, I]]
	[[Category: Megta, A.K]]		[[Category: Megta, A.K]]
		+	[[Category: Krishnan, V]]
		+	[[Category: Palva, A]]
		+	[[Category: Mishra, A.K]]

OCA: Protected "6jch" [edit=sysop:move=sysop]

OCA — Wed, 13 Feb 2019 07:22:25 GMT

Protected "6jch" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:22, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6jch is ON HOLD Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V. Description: Crystal structure of SpaE basal pilin fr...

OCA — Wed, 13 Feb 2019 07:22:23 GMT

New page: '''Unreleased structure''' The entry 6jch is ON HOLD Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V. Description: Crystal structure of SpaE basal pilin fr...

New page

'''Unreleased structure'''

The entry 6jch is ON HOLD

Authors: Megta, A.K., Mishra, A.K., Palva, A., von Ossowski, I., Krishnan, V.

Description: Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG -Orthorhombic form
[[Category: Unreleased Structures]]
[[Category: Krishnan, V]]
[[Category: Mishra, A.K]]
[[Category: Palva, A]]
[[Category: Von Ossowski, I]]
[[Category: Megta, A.K]]