6jf6 - Revision history

OCA at 10:07, 22 November 2023

OCA — Wed, 22 Nov 2023 10:07:49 GMT

←Older revision		Revision as of 10:07, 22 November 2023
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	<StructureSection load='6jf6' size='340' side='right'caption='[[6jf6]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='6jf6' size='340' side='right'caption='[[6jf6]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jf6]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JF6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JF6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jf6]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JF6 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.35Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jf6 OCA], [~~http~~://pdbe.org/6jf6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jf6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jf6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jf6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jf6 OCA], [https://pdbe.org/6jf6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jf6 RCSB], [https://www.ebi.ac.uk/pdbsum/6jf6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jf6 ProSAT]</span></td></tr>
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/A0A0E1FIJ3_ACIBA A0A0E1FIJ3_ACIBA]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Acinetobacter baumannii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Peptide deformylase~~]]	+	[[Category: Synthetic construct]]
-	[[Category: Ho~~, T H~~]]	+	[[Category: Ho TH]]
-	[[Category: Jung~~, K H~~]]	+	[[Category: Jung KH]]
-	[[Category: Kang~~, L W~~]]	+	[[Category: Kang LW]]
-	[[Category: Lee~~, I H]]~~	+	[[Category: Lee IH]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 04:09, 13 February 2020

OCA — Thu, 13 Feb 2020 04:09:05 GMT

←Older revision		Revision as of 04:09, 13 February 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6jf6 is ~~ON HOLD until Paper Publication~~	+	==Met-ala-ser bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii==
-		+	<StructureSection load='6jf6' size='340' side='right'caption='[[6jf6]], [[Resolution\|resolution]] 2.35Å' scene=''>
-	~~Authors~~: ~~Jung, K~~.H., Ho, T.H., ~~Lee~~, I.H., ~~Kang~~, L.W.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6jf6]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JF6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JF6 FirstGlance]. <br>
-	~~Description~~: Met-~~ala~~-~~ser bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
-	[[Category: ~~Lee, I.H~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jf6 OCA], [http://pdbe.org/6jf6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jf6 RCSB], [http://www.ebi.ac.uk/pdbsum/6jf6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jf6 ProSAT]</span></td></tr>
-	[[Category: Ho, T.H]]	+	</table>
-	[[Category: Kang, L.W]]	+	== Function ==
-	[[Category: ~~Jung~~, K.H]]	+	[[http://www.uniprot.org/uniprot/A0A0E1FIJ3_ACIBA A0A0E1FIJ3_ACIBA]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Peptide deformylase]]
		+	[[Category: Ho, T H]]
		+	[[Category: Jung, K H]]
		+	[[Category: Kang, L W]]
		+	[[Category: Lee, I H]]
		+	[[Category: Hydrolase]]

OCA at 04:13, 29 May 2019

OCA — Wed, 29 May 2019 04:13:32 GMT

←Older revision		Revision as of 04:13, 29 May 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jf6 is ON HOLD	+	The entry 6jf6 is ON HOLD until Paper Publication

	Authors: Jung, K.H., Ho, T.H., Lee, I.H., Kang, L.W.		Authors: Jung, K.H., Ho, T.H., Lee, I.H., Kang, L.W.
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	Description: Met-ala-ser bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii		Description: Met-ala-ser bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Kang, L.W]]
	[[Category: Lee, I.H]]		[[Category: Lee, I.H]]
	[[Category: Ho, T.H]]		[[Category: Ho, T.H]]
		+	[[Category: Kang, L.W]]
	[[Category: Jung, K.H]]		[[Category: Jung, K.H]]

OCA: Protected "6jf6" [edit=sysop:move=sysop]

OCA — Wed, 13 Feb 2019 07:30:21 GMT

Protected "6jf6" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:30, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6jf6 is ON HOLD Authors: Jung, K.H., Ho, T.H., Lee, I.H., Kang, L.W. Description: Met-ala-ser bound crystal structure of class I type b peptide def...

OCA — Wed, 13 Feb 2019 07:30:20 GMT

New page: '''Unreleased structure''' The entry 6jf6 is ON HOLD Authors: Jung, K.H., Ho, T.H., Lee, I.H., Kang, L.W. Description: Met-ala-ser bound crystal structure of class I type b peptide def...

New page

'''Unreleased structure'''

The entry 6jf6 is ON HOLD

Authors: Jung, K.H., Ho, T.H., Lee, I.H., Kang, L.W.

Description: Met-ala-ser bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
[[Category: Unreleased Structures]]
[[Category: Kang, L.W]]
[[Category: Lee, I.H]]
[[Category: Ho, T.H]]
[[Category: Jung, K.H]]